Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq24293 569 6e-158 seq32758 179 1e-40 seq5280 156 1e-33 seq27014 136 1e-27 seq32305 129 2e-25 seq28567 120 9e-23 seq1151 107 6e-19 seq28127 96.9 1e-15 >seq24293 Length=256785 Score = 569 bits (630), Expect = 6e-158 Identities = 721/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| || || ||||| | || |||||||| || | Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 206356 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 206297 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | |||||||||||| Sbjct 206296 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 206237 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| || || || | |||| | || || || || |||||||||| || ||| Sbjct 206236 ATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAATC 206177 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| |||||||||||||||||||| ||| || | | || Sbjct 206176 TGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTT 206117 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 206116 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 206057 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| |||| ||||| || |||||| |||| || | | || ||| || Sbjct 206056 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCA 205997 Query 19710 GTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | |||||||| | || ||||| |||||| ||||||||||||||| || || Sbjct 205996 GT-TTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| || |||||| | |||||||| || || ||||| ||||||||||| || Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || || || || || || ||||| Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| || |||||||| ||||| || || || || Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| |||| | | || || |||||||||||||||| Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| | ||| || | |||| | Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTG-TAATTAATA 205519 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 205518 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 205459 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||| || ||| ||||| Sbjct 205458 CTCATAACTTCCCTCTAGATCTAGCT 205433 >seq32758 Length=53022 Score = 179 bits (198), Expect = 1e-40 Identities = 222/300 (74%), Gaps = 3/300 (1%) Strand=Plus/Minus Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 ||||||||||| ||| || | | || | ||||||||| | || ||||| ||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| | |||||||||| || | | | | ||| |||| ||||| || |||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAG 19741 |||| || | | || ||| || || ||||| | |||||||| | || ||||| || Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGT-TTTCTTGATTTACCCAATAGGTCAAGGAAG 20819 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 |||| ||||||||||||||| || || ||||||||||| || |||||| | |||||||| Sbjct 20818 TTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCA 20760 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGG 19861 || || ||||| ||||||||||| || || |||||| | ||||| ||||| |||||||| Sbjct 20759 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 156 bits (172), Expect = 1e-33 Identities = 230/323 (71%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| || || ||||| | || |||||||| || | Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| | ||||| | ||||| || || || || Sbjct 154314 ATGATCCCTACCTTATTGACCGCAACTTTTGTATTTATTATTGCCTTCATTGCTGCTCCT 154255 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | |||||||| ||| Sbjct 154254 CCAGTAGATATTGATGGTAT-CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAAT 154196 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCA---ATAGGACTGCACTTTTATCCG 19526 ||||| || || || | |||| | | ||||| || || |||||||||| || Sbjct 154195 ATTATCTCAGGTGCCATTATTCCTACTT---ATGCAGCTATTGGTTTGCACTTTTACCCA 154139 Query 19527 ATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTT 19586 ||||||||||| | | | ||||| |||||||||||||||||||| ||| || | | Sbjct 154138 ATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATA 154079 Query 19587 GTCTTCCACTTCTTAATAGGAGT 19609 || | ||||||||| | || || Sbjct 154078 GTTCTACACTTCTTACTTGGTGT 154056 >seq27014 Length=84001 Score = 136 bits (150), Expect = 1e-27 Identities = 242/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 |||||||||| || | | | || ||| |||| ||||| || |||||| || | | Sbjct 19927 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAACTC 19986 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | | || ||| || || ||||| | |||| ||| | || |||| |||||| | Sbjct 19987 CTATTGCCGCTGCTACCGCAGT-TTTCTTGATTTATCCAATAGGTCAAGCAAGTTTTTCT 20045 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||| |||| |||| || || ||||||| || || |||||| | |||||||| || || Sbjct 20046 GATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTATTCCAGGCTGAG 20103 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868 ||||| ||||||||||| || || |||||| | ||||| ||||| ||| |||| || || Sbjct 20104 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA-TCGGCGGCTC- 20161 Query 19869 CTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAG 19928 | | || ||||||||| || ||||| | ||| | |||| |||||| | || Sbjct 20162 CCTATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAGAA 20221 Query 19929 GATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 ||| ||| || | || || | || || ||||| ||||| || Sbjct 20222 AATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq32305 Length=14517 Score = 129 bits (142), Expect = 2e-25 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 19335 TGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCC 19394 |||||||| || | ||||| ||| |||| | | || ||| || ||||| | || Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTTCC 12673 Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454 || || | || | || |||||||| ||||| || ||||| || ||||| || || || Sbjct 12672 TTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTA 12613 Query 19455 ATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTG 19514 | ||||||||||||||||| || || || | |||| | || || || || || Sbjct 12612 CTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTG 12553 Query 19515 CACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCA 19574 ||||||||||| ||||||||||| | | ||||| ||||||||||||| |||||| Sbjct 12552 CACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCCT 12493 Query 19575 TATCAA 19580 ||| || Sbjct 12492 TATGAA 12487 >seq28567 Length=163623 Score = 120 bits (132), Expect = 9e-23 Identities = 147/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || || || || ||| |||| | | || || ||||||||||||||||||| ||| Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGC 20194 ||||| || || ||||| |||||||||||| | ||| || | |||| | |||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTG-TAATTAATTCTTGGGA 84049 Query 20195 TGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAA 20254 ||| |||| || | ||||||| || | ||||||||||| || || ||||||||||| Sbjct 84048 TGA--TATTTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAA 83991 Query 20255 CTTCCCACTTGATTTAG 20271 |||||| || ||| ||| Sbjct 83990 CTTCCCTCTAGATCTAG 83974 >seq1151 Length=20901 Score = 107 bits (118), Expect = 6e-19 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| || || ||||| | || |||||||| || || Sbjct 11230 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACTTTGGATGGTTTGGTGTTTTT 11289 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | | ||| || ||||| | ||||| || || || || Sbjct 11290 ATGATCCCTGCCTTATTGACCGAAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 11349 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || | ||| || ||||| || || || | |||||||||||| Sbjct 11350 CCAGTAGATATTGATGGTATTCATGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 11409 Query 19470 ATTATTTCTGGAGC 19483 ||||| || || || Sbjct 11410 ATTATCTCAGGTGC 11423 >seq28127 Length=41111 Score = 96.9 bits (106), Expect = 1e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 ||||||||||| ||| || | | || | ||||||||| | || ||||| ||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| | |||||||||| || | | | | ||| |||| ||||| || |||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAG 19741 |||| || | | || ||| || || ||||| | |||||||| | || ||||| || Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGT-TTTCTTGATTTACCCAATAGGTCAAGGAAG 29670 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTA 19776 |||| ||||||||||||||| || || ||||||| Sbjct 29671 TTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143752497292512