Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24293 520 1e-142 seq32758 168 1e-36 seq27014 145 1e-29 seq28567 131 3e-25 seq5280 125 1e-23 seq32305 120 5e-22 seq28127 96.9 6e-15 seq3204 87.8 3e-12 >seq24293 Length=256785 Score = 520 bits (576), Expect = 1e-142 Identities = 691/956 (72%), Gaps = 5/956 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 206376 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 206318 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 206317 ATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 206258 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || ||||| ||||| || |||| |||| || || Sbjct 206257 TCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 206198 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || ||||||||||||||| | ||||||| ||| | ||||| || Sbjct 206197 GGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGC 206138 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | || || | | |||||| | | || | | |||||||| | Sbjct 206137 GGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 206078 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 206077 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 206018 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| | || ||| ||| || ||| | |||||||| | ||||| || || || Sbjct 206017 CCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCT 205958 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || ||||| || ||| | |||||||| || || Sbjct 205957 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAG 205898 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 205897 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 205838 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 205837 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 205778 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 205777 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 205718 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 || || ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 205717 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 205658 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||||| ||||| || | |||||||| | || | ||||| || || | ||| Sbjct 205657 TCATTACACTTTTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGT 205598 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 205597 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGC 205538 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 ||| || || |||||||| |||| || ||||| | || ||||||||||||||| Sbjct 205537 CAAGGGCGTGTAATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 205478 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 |||||||| ||| | ||||| || |||||||| || || ||| |||||| ||| Sbjct 205477 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAG---CTGCTATCGA 205425 >seq32758 Length=53022 Score = 168 bits (186), Expect = 1e-36 Identities = 185/245 (76%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | |||| | | |||||| |||||||| |||| Sbjct 20943 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 20884 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| | || ||| ||| || ||| | |||||||| | ||||| Sbjct 20883 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 20824 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || || ||||||||| |||| || || || || ||||| || ||| | ||| Sbjct 20823 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTA 20765 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 ||||| || || || |||||||||||||||||||| || ||| |||||| || ||| | Sbjct 20764 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20705 Query 212137 TTCGG 212141 ||||| Sbjct 20704 TTCGG 20700 >seq27014 Length=84001 Score = 145 bits (160), Expect = 1e-29 Identities = 205/283 (72%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | |||| | |||||||| |||||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||| | ||| | | || ||| ||| || ||| | |||| ||| | ||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 | || || || | |||| || |||| || || || | ||||| || ||| | ||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 ||||| || || || |||||||||||||||||||| || ||| |||||| || ||| | Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT- 20150 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTA 212179 |||| || | || || ||||||||| ||||| |||| || Sbjct 20151 ATCGGCGGCTCCCTA-TCAGTGCTATGCATGGTTC-CTTGGTA 20191 >seq28567 Length=163623 Score = 131 bits (144), Expect = 3e-25 Identities = 135/176 (77%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | ||||| |||| ||||| |||||||||||||| ||||| |||||| Sbjct 84152 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 84093 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490 |||||||| |||||| ||| || || | |||||| |||| | ||||| | Sbjct 84092 CAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGATGATAT--TTAACTGT 84035 Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGA 212546 || |||| ||| |||||||||||||| ||| ||||||| || |||||||| || || Sbjct 84034 GCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAACTTCCCTCTAGA 83979 >seq5280 Length=204759 Score = 125 bits (138), Expect = 1e-23 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| ||||| Sbjct 154334 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTTTGTATTTATT 154276 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || ||| ||||||| || |||| Sbjct 154275 ATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGA 154217 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || || || || ||||| ||||| || |||| ||| || || Sbjct 154216 TCTCTACTTTACGGAAAAAATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATT 154157 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || ||||||||||||||| | ||||||| ||| | ||||| || Sbjct 154156 GGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGC 154097 Query 211849 GGTCCTTA 211856 |||||||| Sbjct 154096 GGTCCTTA 154089 >seq32305 Length=14517 Score = 120 bits (132), Expect = 5e-22 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGC 211673 |||||||||||| | |||||||| | ||| | | | ||||| | ||||| | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTTC 12674 Query 211674 ATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATT 211733 ||||| | || |||| || ||||| || || || |||||||| || |||| || | Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 211734 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTT 211793 | || || ||||| || ||||| ||||| || |||| |||| || || ||||| Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 211794 ACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCC 211853 ||||| ||||| |||||||||||| || | ||||||| ||| | ||||| | ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 211854 TTA 211856 ||| Sbjct 12493 TTA 12491 >seq28127 Length=41111 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | |||| | | |||||| |||||||| |||| Sbjct 29546 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 29605 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| | || ||| ||| || ||| | |||||||| | ||||| Sbjct 29606 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 29665 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGG 212054 || || || || ||||||||| |||| || || || Sbjct 29666 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGG 29703 >seq3204 Length=619676 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 212370 ATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAA 212429 |||| |||| || | ||||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 304589 ATGGGTAACTGCTTTAGGTATTTGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 304648 Query 212430 CCAATCAGTTGTTGAT 212445 ||||||||| |||||| Sbjct 304649 CCAATCAGTAGTTGAT 304664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803499738541120