Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq24293 545 3e-150 seq1880 226 3e-54 seq32758 158 1e-33 seq5280 143 3e-29 seq28567 122 1e-22 seq32305 116 4e-21 seq1151 96.9 4e-15 seq28127 93.3 5e-14 >seq24293 Length=256785 Score = 545 bits (604), Expect = 3e-150 Identities = 715/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 206356 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 206298 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 206297 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206238 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || ||||| ||||| | |||| |||| || || || || ||||| || || || Sbjct 206237 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAAT 206178 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||||||| | | || || ||||| |||||||| |||||||| | ||| | | Sbjct 206177 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGT 206118 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 206117 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 206058 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| |||||||||| ||| ||||| ||||| ||||| | || || || Sbjct 206057 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGC 205998 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 205997 AGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || ||||| ||||| || ||| | || ||||| || || |||||||| || |||||||| Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||||||||| ||| | ||||| || || |||||||| ||||| || Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | || || ||| | | ||||| || || || || || || | || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAA 171563 ||| || || ||||| |||||||||||||| || ||| || || || | | | | Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTG-TAATTAATA 205519 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 205518 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 205459 Query 171624 CACACAACTTCCCACTAGACCTAGC 171648 | || |||||||| ||||| ||||| Sbjct 205458 CTCATAACTTCCCTCTAGATCTAGC 205434 >seq1880 Length=405587 Score = 226 bits (250), Expect = 3e-54 Identities = 417/612 (68%), Gaps = 21/612 (3%) Strand=Plus/Minus Query 172221 TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 || || || |||||| |||| ||| | |||||||||| |||||| ||| |||| ||| Sbjct 130677 TTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTAGTGTAGCA 130618 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 172340 || || ||||| | || | || | || || || || ||| || || || |||||| Sbjct 130617 GCTATATTTCGATTCATACTCTTTTTTCAAGGATTTCATAATTGGACACTGAACCCATTT 130558 Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 ||||||||||| || || ||| || | || | || || |||| || || |||||||| Sbjct 130557 CATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCT 130498 Query 172401 ACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCT 172460 || ||| | || || || | |||||| ||| ||| ||| | Sbjct 130497 ACCGTAGAAAATACTTTATTTGAAGATGG------------TGATGGTG-----CAAA-T 130456 Query 172461 ACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCT 172520 ||| ||| | || || | || || || | |||||||||||| ||| | || ||| Sbjct 130455 ACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCT 130399 Query 172521 AACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTC 172580 ||| | || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| Sbjct 130398 AACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 130339 Query 172581 CTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTT 172640 ||||||| || ||||| || | ||| | |||| || | || | || ||| | Sbjct 130338 TTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTG 130279 Query 172641 GCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCA 172700 || || ||||| | || || ||||| || ||||| || || | ||||| ||||| || Sbjct 130278 GCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCT 130219 Query 172701 GAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATG 172760 || ||||| || |||||||| || || ||||| | || |||||||| | || |||||| Sbjct 130218 GAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGCTTGGATG 130159 Query 172761 TCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGC 172820 | || ||||| || ||||| ||| || | ||||| || || || | ||||| || Sbjct 130158 GCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGA 130099 Query 172821 AACGCACTATAA 172832 ||||| || ||| Sbjct 130098 AACGCTCTTTAA 130087 >seq32758 Length=53022 Score = 158 bits (174), Expect = 1e-33 Identities = 215/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 ||||| |||||||| | ||| | || | |||||| | |||| | || |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || | ||| |||||||||| ||| ||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| | || || ||||| ||| | | || ||| | ||||| || Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| || || ||||| ||||| || ||| | || ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237 || || |||||||| || |||||||| || || ||| ||||||||| ||| | ||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 143 bits (158), Expect = 3e-29 Identities = 209/289 (72%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTC 170783 |||||||| | ||| | || || || |||| || ||| | || ||||| ||||||| Sbjct 154314 ATGATCCC-TACCTTATTGACCGCAACTT-TTGTATTTATTATTGCCTTCATTGCTGCTC 154257 Query 170784 CTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA 170843 ||||||| ||||| || || ||| | ||||| ||| | || ||| | | || || || | Sbjct 154256 CTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAA 154198 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || ||||| ||||| | |||| ||| || || || || ||||| || || | Sbjct 154197 ATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAA 154138 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTA 170952 ||||||||||||| | | || || ||||| |||||||| |||||||| Sbjct 154137 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTA 154089 >seq28567 Length=163623 Score = 122 bits (134), Expect = 1e-22 Identities = 149/200 (75%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 |||||||| || | ||||| || || | ||||| | || ||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAA---CATG 171567 || ||||| |||||||||||||| || ||| || || || |||| | | || Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTG----TGTAATTAATTCTTG 84052 Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 || ||| || |||| | || |||| ||| |||||||||||||||||| ||||||| || Sbjct 84051 GGATGATATT--TAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCA 83994 Query 171628 CAACTTCCCACTAGACCTAG 171647 |||||||| ||||| |||| Sbjct 83993 TAACTTCCCTCTAGATCTAG 83974 >seq32305 Length=14517 Score = 116 bits (128), Expect = 4e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 170769 ||||||||||| || |||||||| | ||| | || || || || || ||| | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTTC 12674 Query 170770 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 170829 ||||| | |||| ||||||| ||||| || || || | ||||| ||| | || ||| | Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 170830 CTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATT 170889 | || || ||||| || ||||| ||||| | |||| |||| || || || || Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 170890 ACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCC 170949 ||||| ||||| |||||||||||| | | | || || ||||| ||||||| ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 170950 TTA 170952 ||| Sbjct 12493 TTA 12491 >seq1151 Length=20901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 11230 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACTTTGGATGGTTTGGTGTTTTT 11289 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| || ||| | || | || || || ||| | || ||||| |||||||| Sbjct 11290 ATGATCCC-TGCCTTATTGACCGAAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 11348 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || ||||| ||| | || ||| | | || || ||||| Sbjct 11349 TCCAGTAGATATTGATGGTATTCATGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 11408 Query 170845 CATCATCTCTGGTGC 170859 || ||||| ||||| Sbjct 11409 TATTATCTCAGGTGC 11423 >seq28127 Length=41111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 ||||| |||||||| | ||| | || | |||||| | |||| | || |||||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || | ||| |||||||||| ||| ||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| | || || ||||| ||| | | || ||| | ||||| || Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTA 171152 || |||||||||||||| ||||| || || |||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567404967113280