Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq29890 201 1e-46 seq938 185 1e-41 seq21561 116 5e-21 >seq29890 Length=111316 Score = 201 bits (222), Expect = 1e-46 Identities = 416/617 (67%), Gaps = 4/617 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 |||||| ||||| ||||||||||| || |||||||| |||| ||||| || || || Sbjct 72423 CAAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGT 72482 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| |||||||| || |||||||| ||||| |||||||| ||| ||| ||||| Sbjct 72483 CAGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGAGCAGAAGCTTCCGGAAAA 72542 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCA 33477 ||| || ||||| || ||| ||||| | | || |||| || || | | | | Sbjct 72543 GAATATACCTTCGACACAAGCGAAGGCCACTA--TTCGCTCCGCAAACGACTCCGACCCC 72600 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | ||||| | ||||| | ||||||| | | | || || || ||||| || || Sbjct 72601 TCGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGCG 72660 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| ||| || || |||||| | ||||| |||| ||| || || ||| Sbjct 72661 TGGAAGAGCAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGTAC 72720 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| |||||||| |||||||| | |||||| | Sbjct 72721 ATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGAG 72780 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | ||||| |||| | || || || || ||||| || Sbjct 72781 ACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGCG 72840 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 || || || || | || ||||| || |||| || ||||| | || || | ||| Sbjct 72841 GCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCAG 72900 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | || ||| | || | ||| || || || | ||||| || || || || || || Sbjct 72901 TGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTTC 72960 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| | |||||| | | || || || ||||| ||| |||| || ||| ||| Sbjct 72961 TTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGTTT 73020 Query 33898 GGTGCAAGGATGGGTTC 33914 || || |||| |||||| Sbjct 73021 GGGGCGAGGAGGGGTTC 73037 >seq938 Length=1173706 Score = 185 bits (204), Expect = 1e-41 Identities = 417/623 (67%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | ||| ||||| ||||| || || || | ||||||||||| ||| || | Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGG 1020853 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33472 | ||||| || || || || ||||||||| | || | ||| || || ||| | Sbjct 1020854 AGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGATC 1020913 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| | | ||||| | ||||||||| | || || || | || || | Sbjct 1020914 CGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAA 1020970 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | || ||||| | || || |||||| | || || |||| || ||||| Sbjct 1020971 TAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGAC 1021030 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 | ||||| || || || ||||| || || || ||||| |||||||| || | |||| Sbjct 1021031 TGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCT 1021090 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCA 33711 ||| || ||| |||||| | || | | | || || | ||| || || || || || Sbjct 1021091 CGGAAACCTGGACTTCT-TTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCG 1021149 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| ||||| || |||| |||||||| || |||| || || || | || || Sbjct 1021150 GAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCT 1021209 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| | || || | || | |||||| || || |||||||||| || || || Sbjct 1021210 TCCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCG 1021269 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTT 33891 ||||| || ||||| | ||| || | | || | || ||||| ||| || | | | Sbjct 1021270 GCCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATACAGAAGCGGTCT 1021329 Query 33892 GGATTTGGTGCAAGGATGGGTTC 33914 || || | ||||||| ||||| Sbjct 1021330 GGGTTCGCCGCAAGGAGCGGTTC 1021352 >seq21561 Length=15626 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | |||||| ||||| || ||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||| ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| || ||||| | ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 63111 TCTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 ||||| || ||| |||||||| || || || || || |||||| || |||| | Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTC--TCAAATTCATCACCCCAACAATCAGCCAACC 4900 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 ||||| | || | ||||| | ||||||||||| ||| | | | |||| || ||||| Sbjct 4899 CAGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAA 4840 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 | |||||||| | ||||||||| ||| |||||||||| | ||| ||||| Sbjct 4839 ATAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619818821456320