Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq18673 96.9 3e-15 seq191313 93.3 4e-14 seq104699 89.7 4e-13 seq25458 87.8 2e-12 >seq18673 Length=525508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || | || || ||||| || || | || |||| Sbjct 460376 AATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACGATCACTTTGGAGGTGGAGGGTTC 460317 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | || ||| || ||| || ||||||||| |||| ||||| Sbjct 460316 CGATACCATTGATAATGTTAAAGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 460257 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| ||||| || | || |||| || || | || |||||||| Sbjct 460256 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTAGCTGATTATAA 460197 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| ||||| ||| | ||| ||||||||||| | |||| || Sbjct 460196 CATTCAAAAGGAGTCGACTCTCCATCTGGTGTTGAGACTCAGAGGCGG 460149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTAC------CGTCGAAACGGAG 115339 ||||| || |||||||| || || || || ||||||||||| |||||| || Sbjct 466337 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAA----AG 466282 Query 115340 TCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | | |||||| | | ||||| || ||| ||| ||| || |||| |||| | || Sbjct 466281 TTC--CGACAC-GATAGACAATGTCAAAGCAAAGATTCAGGACAAAGTAGGCATTCCTCC 466225 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||| || || || | || | ||| |||||||| | ||||||| || ||| | | | Sbjct 466224 TGACCAACAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACGCTCGTGAA 466165 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| || || || || ||| | ||| |||| ||| | ||| | || |||| Sbjct 466164 TTATAACATCCAGAAGGAATCAACTCTGCATCTGGTCTTGCGGTTGAGGGGTGGAA 466109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTAC------CGTCGAAACGGAG 115339 ||||| || |||||||| || || || || ||||||||||| |||||| || Sbjct 503566 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAA----AG 503511 Query 115340 TCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | | |||||| | | ||||| || ||| ||| ||| || |||| |||| | || Sbjct 503510 TTC--CGACAC-GATAGACAATGTCAAAGCAAAGATTCAGGACAAAGTAGGCATTCCTCC 503454 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||| || || || | || | ||| |||||||| | ||||||| || ||| | | | Sbjct 503453 TGACCAACAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACGCTCGTGAA 503394 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| || || || || ||| | ||| |||| ||| | ||| | || |||| Sbjct 503393 TTATAACATCCAGAAGGAATCAACTCTGCATCTGGTCTTGCGGTTGAGGGGTGGAA 503338 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || | || || ||||| || || | || |||| Sbjct 497842 AATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACGATCACTTTGGAGGTGGAGGGTTC 497783 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | || ||| || ||| || ||||||||| |||| ||||| Sbjct 497782 CGATACCATTGATAATGTTAAAGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 497723 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| ||||| || | || |||| | || | || ||||| || Sbjct 497722 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCTGATTACAA 497663 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| ||| | ||| ||||||||||| | |||| || Sbjct 497662 CATTCAGAAGGAGTCAACTCTCCATCTGGTGTTGAGACTCAGAGGCGG 497615 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || | || || ||||| || || | || |||| Sbjct 498298 AATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACGATCACTTTGGAGGTGGAGGGTTC 498239 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | || ||| || ||| || ||||||||| |||| ||||| Sbjct 498238 CGATACCATTGATAATGTTAAAGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 498179 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| ||||| || | || |||| | || | || ||||| || Sbjct 498178 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCTGATTACAA 498119 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| ||| | ||| ||||||||||| | |||| || Sbjct 498118 CATTCAGAAGGAGTCAACTCTCCATCTGGTGTTGAGACTCAGAGGCGG 498071 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || | || || ||||| || || | || |||| Sbjct 498754 AATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACGATCACTTTGGAGGTGGAGGGTTC 498695 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| || ||| | || ||| || ||| || ||||||||| |||| ||||| Sbjct 498694 CGATACCATTGATAATGTTAAAGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 498635 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| ||||| || | || |||| | || | || ||||| || Sbjct 498634 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACTCTAGCTGATTACAA 498575 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| ||| | ||| ||||||||||| | |||| || Sbjct 498574 CATTCAGAAGGAGTCAACTCTCCATCTGGTGTTGAGACTCAGAGGCGG 498527 >seq191313 Length=592 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115369 AAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAA 115428 ||||||| ||||| ||||| | ||| ||||||||| | | |||| ||| ||||| Sbjct 255 AAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAGCAACGTTTAATTTTTGCTGGCAA 196 Query 115429 ACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACA 115488 || | || |||| || || | || ||||||||||||||||| ||||| ||| | || Sbjct 195 GCAGCTCGAGGATGGCAGGACTCTAGCTGATTATAACATTCAAAAGGAGTCGACTCTCCA 136 Query 115489 TATGGTGTTGAGATTGCGAGGAGG 115512 | ||||||||||| | |||| || Sbjct 135 TCTGGTGTTGAGACTCAGAGGCGG 112 >seq104699 Length=868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || ||||| |||||||||||| | || ||| | | Sbjct 616 ATGCAGATCTTTGTAAAGACTCTTACGGGGAAAACCATTACCCTTGAGGTCGAGAGCTCC 675 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| || ||| || || ||||| |||| || ||| Sbjct 676 GACACCATTGATAACGTAAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 735 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || | || || | | |||| ||||||| || ||| Sbjct 736 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGAACCTTGGCCGACTACAAC 795 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || ||| | || ||||| |||| |||| || || Sbjct 796 ATCCAGAAAGAATCGACTCTGCACTTGGTGCTGAGGCTGCGTGGTGG 842 >seq25458 Length=394795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACC------GTCGAAACGGAG 115339 ||||| || |||||||| || || || || ||||||||||| ||||||| | Sbjct 385427 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAAA----G 385482 Query 115340 TCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | | | |||| | | ||||| || || || ||| || ||||||||| | || Sbjct 385483 TTCTG--ACAC-GATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCC 385539 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 || ||||| || | || | ||| |||||||| | ||||||| || ||| | || || Sbjct 385540 CGACCAGCAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGA 385599 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||| || || || || ||| | ||| |||| ||| | ||| | || |||| Sbjct 385600 TTATAACATCCAGAAGGAATCAACTCTGCATCTGGTCTTGCGGTTGAGGGGTGGAA 385655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423261365842240