Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq104699 96.9 3e-15 seq8936 89.7 4e-13 seq25453 86.0 5e-12 seq7521 84.2 2e-11 seq25458 82.4 6e-11 seq18673 82.4 6e-11 >seq104699 Length=868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||||||| |||| ||||| || || || || || ||||||||||||||| Sbjct 842 CCACCACGCAGCCTCAGCACCAAGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCGGCC 783 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||||| || || || ||| | || |||| ||| ||||| || Sbjct 782 AAGGTTCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 723 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | |||||| | ||| Sbjct 722 ATCCCTTCCTTGTCCTGAATCTTGGCT--TTTACGTTATCAATGGTGTCGGAGCTCTCGA 665 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 664 CCTCAAGGGTAATGGTTTTCCCCGTAAGAGTCTTTACAAAGATCTGCAT 616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||||||||| | ||| | | ||| Sbjct 371 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 312 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| ||||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 311 TCGAGCTGTTTACCCGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 252 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | |||| || | ||||| | Sbjct 251 TGGATCTTGGC--CTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGAGTGATCG 194 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || |||||||| Sbjct 193 TCTTCCCCGTTAGGGTCTTGACGAAGATCTGCAT 160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||||||| |||| || || ||||| ||||| || ||||||||||||||| Sbjct 614 CCACCACGGAGCCTCAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCC 555 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| || | || || || || | || | || ||| ||||| || Sbjct 554 AAGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGCGGG 495 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | |||||| | || Sbjct 494 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTATCGATGGTGTCGGAGCTTTCAA 437 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || || || |||||||| Sbjct 436 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTAACGAAGATCTGCAT 388 >seq8936 Length=98635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || |||||||||||||| | ||| | | ||| Sbjct 10015 AGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 9956 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || || ||||| |||||| || | ||||| || || Sbjct 9955 TCCAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGGGGTATACCCTCCTTATCC 9896 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| || || || | ||| || | Sbjct 9895 TGGATCTTGGC--CTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATCG 9838 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || ||||| ||||| || ||||| |||||||| Sbjct 9837 TCTTCCCCGTCAGGGTTTTAACGAAAATTTGCATTTT 9801 >seq25453 Length=344677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || || | ||||||||||||||||||||| ||||| ||||| || Sbjct 136541 CCTCCCCTCAGGCGCAAAACAAGATGCAGCGTGGACTCCTTTTGGATGTTATAGTCTGCA 136600 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAAT-AAGCCGCTGTTGGTCCACAGG 16827 | || || | ||||| | ||||| || ||| | || || ||||| || || ||| Sbjct 136601 AGTGTCCTGCCATCCTCAAGCTGTTTACCAGCAAAGATCAATTCGCTGCTGATCAGGAGG 136660 Query 16828 CACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || |||||||| ||||| ||| || || | | | | ||||| ||| Sbjct 136661 AATTCCTTCTTTGTCCTGAATTTTGGCT--TTAACATTGTCAATCGTGTCAGAACTCTCG 136718 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||| || || ||||| |||||||| Sbjct 136719 ACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGCAT 136768 >seq7521 Length=567817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||||||| |||| ||||| || || || || || ||||||||||||||| Sbjct 336894 CCACCACGCAGCCTCAGCACCAAGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCGGCC 336953 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || || || | || | || ||| ||||| || Sbjct 336954 AAGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGCGGG 337013 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | |||||| | || Sbjct 337014 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTATCGATGGTGTCGGAGCTTTCAA 337071 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || || || |||||||| Sbjct 337072 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTAACGAAGATCTGCAT 337120 >seq25458 Length=394795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || |||| || | ||| || || |||||||| || |||||||| ||||| Sbjct 387391 CCCGCCTCTGAGTCTCAACACTAGATGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGC 387332 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | || ||||| ||| |||| | || || || ||| ||| Sbjct 387331 TAGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGG 387272 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| |||||||| || ||||| ||| || | | | | ||| || ||| Sbjct 387271 AATGCCTTCTTTGTCTTGGATTTTTGC--CTTGACATTGTCTATAGTATCTGAACTCTCG 387214 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || ||||| ||||| | || ||||| ||||||||||||||| Sbjct 387213 ACCTCTAATGTAATGGTCTTTCCTGCGAGAGTTTTAACAAAAATCTGCATT 387163 >seq18673 Length=525508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || |||| || | ||| || | |||||||| || |||||||| ||||| Sbjct 466338 CCCGCCTCTGAGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGC 466397 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | || ||||| ||| |||| | || || || ||| ||| Sbjct 466398 TAGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGG 466457 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| |||||||| || ||||| ||| || | | | | ||| || ||| Sbjct 466458 AATGCCTTCTTTGTCTTGGATTTTTGC--CTTGACATTGTCTATAGTATCTGAACTCTCG 466515 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || ||||| ||||| || || ||||| ||||||||||||||| Sbjct 466516 ACCTCTAATGTAATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 466566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || |||| || | ||| || | |||||||| || |||||||| ||||| Sbjct 503567 CCCGCCTCTGAGTCTCAACACTAGATGGAGAATCGACTCCTTCTGAATGTTGTAATCGGC 503626 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | || ||||| ||| |||| | || || || ||| ||| Sbjct 503627 TAGAGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAAGCGTTGCTGATCCGGAGG 503686 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| |||||||| || ||||| ||| || | | | | ||| || ||| Sbjct 503687 AATGCCTTCTTTGTCTTGGATTTTTGC--CTTGACATTGTCTATAGTATCTGAACTCTCG 503744 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || ||||| ||||| || || ||||| ||||||||||||||| Sbjct 503745 ACCTCTAATGTAATGGTCTTTCCTGTGAGAGTTTTAACAAAAATCTGCATT 503795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403104546358480