Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq938 179 5e-40 seq21561 120 4e-22 >seq938 Length=1173706 Score = 179 bits (198), Expect = 5e-40 Identities = 395/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || |||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct 1020734 ACAACAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAA 1020793 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | ||| ||||| ||||| || || || | ||||||||||| |||| | | | || Sbjct 1020794 AAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGG-CGCAGAAGCTCCCG 1020852 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828 || ||||| || || || || |||||||| | || | ||| || || ||| Sbjct 1020853 GAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGAT 1020912 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| | | ||||| | ||||||||| | || || || | ||| || Sbjct 1020913 CCGTC---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCA 1020969 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 ||||| ||||| | || || |||||| | ||||| || | || |||| Sbjct 1020970 ATAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGA 1021029 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || ||||| || || || || || |||||||| || | ||| Sbjct 1021030 CTGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCC 1021089 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| || ||| |||||| | || | | |||| ||| || || || || || Sbjct 1021090 TCGGAAACCTGGACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCG 1021149 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 ||| ||||| || |||| |||||||| || |||| || || || | || || Sbjct 1021150 GAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCT 1021209 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | || || | || | ||| || || || |||||||||| || || || Sbjct 1021210 TCCCAGTGGGCGAGGTCCTGCGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCG 1021269 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||||| || ||||| | ||| || | | | || | ||| || || ||| Sbjct 1021270 GCCTTCTTGTACATTTCCCAAATCTGAGGGTACTCAATGGGGAACATA 1021317 >seq21561 Length=15626 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||| ||||| |||||||||||| | ||| | |||| Sbjct 4057 GTCCCGGCATTGAAAAGGGTAGGTGAAGCATGAGTAAACCATCGCTGAGACAACAGATGA 3998 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||| ||||| |||||||| | ||| ||||| || || || || | ||| || Sbjct 3997 TATGTTTTAATGGCTGAATCTATATCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 3939 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| || ||||| | ||| | || || || | ||| || |||| | Sbjct 3938 CATGTGCTGAGGCCTCTCAACAACCTTCCCTTGGATCTTTAAAAGGTAAGACCTTTCAAG 3879 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||||||||||| | || |||||||| || || || || Sbjct 3878 GGTTTTAAAACCAAAATAATCATAGTCAAAGTCTCTGTCATATATGAT 3831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || ||||| || | |||| ||| |||| ||| | |||| | ||| || | ||| ||| Sbjct 4457 CCACCCTGGTCCACATATCGAGCAGTGTCATTGAAGACTCGAAGCATCGGGACAATCCCA 4398 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||||||||| ||||| ||||| |||||| | ||||| || ||| | || Sbjct 4397 TTTGATGTACCATTTGTCCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGAA 4338 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| || | ||| || || | |||||||| ||| Sbjct 4337 ACACCAATTCCTCCAGCAGATTTGCTTATAATTGCACACTCCTTCAGAGTATCATATATG 4278 Query 63407 CCCTCTATACTATCATCCATCAT 63429 ||||| || |||||||| |||| Sbjct 4277 CCCTCAATGCTATCATCTTTCAT 4255 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 62966 TCTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 ||||| || ||| |||||||| || || || || || |||||| || ||| | Sbjct 4957 TCTCTCTCATATCGAGTGTATAAGGTC--TCAAATTCATCACCCCAACAATCAGCCAACC 4900 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63083 ||||| | || | ||||| | ||||||||||| ||| | | | |||| || ||||| Sbjct 4899 CAGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAA 4840 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 | |||||||| | ||||||||| ||| |||||||||| | ||| ||||| Sbjct 4839 ATAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGGCACGATGCTCCTC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630449963459200