Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq29890 257 3e-63 seq938 196 9e-45 seq33853 98.7 2e-15 >seq29890 Length=111316 Score = 257 bits (284), Expect = 3e-63 Identities = 392/555 (71%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| |||||| || |||||| | || || Sbjct 72977 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACGGCTGAGGAGGTCGATTTG 72918 Query 42360 GCCAAGGA-CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 || |||| | | | | |||||| | || ||| |||| ||| |||| ||||| | Sbjct 72917 TCCCAGGATCTCCGACA-CTGGGACGCTCTTACTGCTGACGAGAAGCATTTCATCAAACA 72859 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | | || |||||||||||||| || |||||||| || |||||||| || | | || Sbjct 72858 CGTGCTCGCCTTCTTCGCCGCATCCGACGGCATCGTATTGGAGAACCTTGCGGGCCGATT 72799 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 |||||| ||||| ||| || ||||| || |||||||||||| ||||| |||||||| Sbjct 72798 CATGAAGGAGGTCCAGGTCTCGGAGGCTCGGGCCTTCTACGGCTTTCAGATCGCCATAGA 72739 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 |||| | ||||| ||| ||||| | ||||| | || |||||| ||| ||| || Sbjct 72738 GAACATCCACTCCGAGATGTACAGCCTCTTGCTCGAAACTTACATCAAAGATTCCGCGGA 72679 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| ||| ||| | || || || || || ||||||||| ||| |||||| | || Sbjct 72678 GAAGAACCTGCTCTTCCACGCGATCGAAACCATCCCCTGCATCGAGACGAAGGCCAAGTG 72619 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||| ||| |||||||||| | | || |||| | ||| | | || ||||| | Sbjct 72618 GGCCCTCCGCTGGATCGAGGGGTCGGA---GTCGTTTGCGGAGCGAATAGTGGCCTTCGC 72562 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 ||||| || || ||||| || || |||| |||||| ||||||||||| || Sbjct 72561 TTGTGTCGAAGGTATATTCTTTTCCGGAAGCTTCTGCTCCATATTCTGGCTCAAAAAGCG 72502 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 | | ||||| ||||| || ||||||||||| | ||| ||| ||||| |||||||| Sbjct 72501 AGGGCTAATGCCGGGACTGACTTTCTCGAACGAGTTAATCTCCAGAGACGAAGGGCTGCA 72442 Query 42839 TAGGGACTTTGCCTG 42853 | ||||| ||||| Sbjct 72441 CTGCGACTTCGCCTG 72427 >seq938 Length=1173706 Score = 196 bits (216), Expect = 9e-45 Identities = 377/550 (69%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA 42367 |||||||||||||| | || | ||| ||||| ||||||||| | || || | |||| Sbjct 1021283 ATGTACAAGAAGGCCGAAGCT-TCCTTTTGGACAGCCGAGGAGGTAGATTTGTCGCAGGA 1021225 Query 42368 CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | ||| |||||| | || ||| | || ||| |||| ||||| | | ||||| Sbjct 1021224 CCTCGCCCACTGGGAAGCCCTCACTGCCGATGAGAAGCATTTCATCAAACATGTTCTGGC 1021165 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 |||||| || ||||| || ||||| || ||||| || || ||||||||||||||| Sbjct 1021164 CTTCTTTGCTGCCTCCGATGGCATCGTTTTGGAGAATCTAGCTGGCAGGTTCATGAAAGA 1021105 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || ||| | ||||||||| || ||||| |||||||| || || |||||| | || Sbjct 1021104 AGTCCAGGTTTCCGAGGCGCGCGCGTTTTACGGATTCCAGATTGCAATCGAGAACATCCA 1021045 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGG 42607 ||| ||| ||||| |||||| | || |||||| ||| | | |||| | | Sbjct 1021044 CTCCGAGATGTACAGTCTTCTGCTCGAAACATACATCAAAGATTCGGCCGAGAAGAGTCG 1020985 Query 42608 GCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAA 42667 || ||| || || || || | || ||| | |||||||||| | ||||| || Sbjct 1020984 CCTCTTCCGAGCTATTGACACAGTCCCATGCGTGGAGAAGAAGGCCAAGTGGGCCCTACG 1020925 Query 42668 CTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||||| | |||| | | || | |||| |||| | |||||| | ||| || Sbjct 1020924 TTGGATCGACGGATCCGA---ATCTTTTGCCGAGCGGCTACTCGCCTTTGCTTGCGTTGA 1020868 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GA 42786 ||| || |||||||| || |||| | |||| || ||| | ||| | | | | | | Sbjct 1020867 GGGGATATTCTTCTCCGGGAGCTTCTGCGCCATATTTTGGTTGAAG-AAACGCGGCCTCA 1020809 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| ||| | || || || ||||| || ||| || |||||||| ||||| | |||| Sbjct 1020808 TGCCAGGATTAACTTTTTCCAACGAGCTAATCTCGAGAGACGAGGGTCTGCACTGCGACT 1020749 Query 42847 TTGCCTGCCT 42856 | || ||||| Sbjct 1020748 TCGCATGCCT 1020739 >seq33853 Length=384389 Score = 98.7 bits (108), Expect = 2e-15 Identities = 206/297 (69%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 243872 AAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGAT 243930 || ||||| || |||||||||||||||| | ||| |||| ||| | || |||| | ||| Sbjct 88840 AACAGGTTCAGCGACTGGCTCTGGTCGATGTAGG-CGCCGCGCGCAGCTGCCAGGTCGAT 88782 Query 243931 GAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGA--TGG-GCTTGAGGTGCTCGGG 243987 || ||||||| | | ||| || | || ||||| ||| || || ||||||| Sbjct 88781 CAGCGCCTTCTGCGGCAGCTCCCACACGGTGCGGTAGACCTGGCGC---AGCCGCTCGGG 88725 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || | | ||||| ||| | ||| || | | ||| |||| ||||| | | Sbjct 88724 GATCGCCGCGATGCCCTGGATCGATCCTTCCGCCAGTTTGATCTGGTCGCGCACCTCGGC 88665 Query 244048 GTTCCACAGGCCCAAGCG-CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 |||||||||||| ||| || |||| |||||||||||| | |||||||||| || | Sbjct 88664 CGTCCACAGGCCCA-GCGTCTTCAGCTCCTCGACCAGGTAGCGGTTCACCACCAAGAAGT 88606 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTT--GCTGCTGAGCGGCTCGATGCTCTC 244161 | ||||||||| ||||| | | ||||| | || |||||||||||| ||| Sbjct 88605 CGCCCGACAGCGTTTCGCGCTTGAACAGGTTCGACACCT--GCGGCTCGATGCACTC 88551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939596822971520