Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq35681 132 1e-26 >seq35681 Length=3718 Score = 132 bits (146), Expect = 1e-26 Identities = 466/708 (66%), Gaps = 46/708 (6%) Strand=Plus/Minus Query 13419 CTCTATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCAC 13478 ||| |||| || ||||||| | ||| | ||| |||||| |||||| ||||| | Sbjct 712 CTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCGCCAGCTGTGCTTCTCCAGGAT 653 Query 13479 TCGGAAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCG 13538 |||||| |||| | || ||||||||| || || || || || | |||||| Sbjct 652 TCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCG 593 Query 13539 GGTGCGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGAC-GCC 13597 ||| || || |||||||| || | ||| ||| ||| ||||||| || | | | Sbjct 592 GGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTC 533 Query 13598 CGGGCTTGTAGTCCTCCCATCGGGTGGGGTCC--ACCCCTGCCCGCTCCATGTCCTGGAA 13655 |||| | |||||| |||| || ||| | | || |||||| ||| || Sbjct 532 CGGG-TCGTAGTCAGTCCATAGGCCCAAGTCGGAATAGCAGC--GCTCCAGGTCGGTCAA 476 Query 13656 CTTGAACACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTC 13715 ||| ||| | ||| |||||| || ||||||| | || | ||||| ||| Sbjct 475 GGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTC 416 Query 13716 CTCCGGGTACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGA-GGCGAATGG 13774 || |||||| || || ||| | ||||| |||| ||| ||| ||||| ||| Sbjct 415 TTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGA-TGG 357 Query 13775 CGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGATGCGGCCGCCGTCGC 13834 |||| | || |||||||| | ||||||||||| ||| ||||| | || ||||| || Sbjct 356 CGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA-CG--CGCCG--GC 302 Query 13835 GTAGGTCATCTTCACCAGGGAAGTCGATGGCCACCCGGCTCGGCCG-CTGTCC---CTTC 13890 | | |||| | | ||| ||| | | |||| ||||| || ||| ||| Sbjct 301 ATGG---ATCTGCGCT-------TCGCTGGGC-CACGGCCCGGCCTTCTTTCCGCGCTTG 253 Query 13891 CAGC----GA-----TCCCCGGTCCAGAACCGGTACGCCTCGTGC---ACCTTGCTCGAC 13938 | | || || ||||||||| || | || |||| |||| ||| ||| | | Sbjct 252 CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGC 193 Query 13939 GGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTC-TGGGTCGCCATGGCACTGGCCACA-T 13996 | || ||||||||||| |||||| | | || | ||||| || |||||||| | Sbjct 192 GTGG---AGAAGTAGGTCAGGCGCCACTTTTGCATGCGAGGCCATCGCGCTGGCCACCGT 136 Query 13997 CAGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGC 14056 | | |||||||| ||| |||||||||||||| ||||||||||||||||| |||| | Sbjct 135 CTG-CAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGT 77 Query 14057 GGGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCC 14104 | ||| || ||||| ||| || ||| || |||| || |||| Sbjct 76 AGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCC 29 Score = 84.2 bits (92), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTACCCCTTTGGAGTT--CGCGATCATCT 11601 |||||||| |||||||| ||||||||||| || || || || | || ||| ||| || Sbjct 1822 GGGATGTTGACGAACATAGAGCGGAAGTTACCGACTCCCTT--ACTTGCCGCAATCTGCT 1765 Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661 |||| | |||||| || || || || |||| ||| ||||| | | | Sbjct 1764 GTTTCAGATTCTCTTCATCTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATC 1705 Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAGCA 11721 | ||||||||||| | ||||||| || || ||||| || || | | ||| | || Sbjct 1704 CGGCATGGGCGCCGTTACTGTAGTAGCGCCGGCGAAACAGTGTCGCCGCTTCGTTCAACA 1645 Query 11722 GCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGACCTGCTGCTC 11773 || ||||| || ||||| | ||| ||||| || || |||| | |||||| Sbjct 1644 GCAGCGACTGGAGCCCGCCCAAGTAGTCGGGTATCCCGTAGATGTTCTGCTC 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108112145544528