Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq33836 111 4e-20 seq12962 93.3 1e-14 >seq33836 Length=293188 Score = 111 bits (122), Expect = 4e-20 Identities = 132/178 (74%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 29201 TGGCCACGGCGTAGCGCATGATCTGGCCGCAGTTCTGCATGATCCGATGCGCGGATTCGA 29260 |||| | |||||||||||| | || |||||| |||||| | || |||||||| |||| Sbjct 31086 TGGCGATGGCGTAGCGCATCACCT-CCCGCAGGTCTGCAACACGCGGTGCGCGGACTCGA 31028 Query 29261 TTGCGCCGCGTTCCTCGATGCGTCGGGCCACCCGGAGGAAGTCGGGCGCGGTGAGGTCCG 29320 | ||||| || ||||| ||||| || ||||||| ||||| || || |||| | || | Sbjct 31027 TGGCGCCCCGCTCCTCCATGCGCCGCACCACCCGCAGGAACTCAGGAGCGGACAATTCGG 30968 Query 29321 CAACAGAGCGTGACCCGATCCAGGGGAATACGTCGTTCTTCATCCAGGCTTCGACCTT 29378 | || | || ||||| | || | ||||||||| ||||||||| |||||||| Sbjct 30967 CTACCGGACGGCCGCCGATGTACGGATAGACGTCGTTCACCATCCAGGCCTCGACCTT 30910 >seq12962 Length=520891 Score = 93.3 bits (102), Expect = 1e-14 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 29473 GCAGCCTTCTTCTGCGCGCCTGGGTCGACGCCTCGGGCCAGCAGCCGGCGGGCTTCGTCG 29532 || |||| |||| |||||| |||||| ||| ||||| ||| || ||||| || Sbjct 493051 GCTGCCTGCTTCGCCGCGCCGGGGTCGCTGCCGTTCGCCAGTAGCTTCCGCGCTTCCTCT 493110 Query 29533 CGGGCCTCGNNNNNNNNNNCCAAGGAGACATCCGGGTACAGGCCGATCGAAAGCAGCTTC 29592 ||| ||| | | |||||| ||||||| ||||| || ||||||||| Sbjct 493111 CGGCGCTCCCGTGCGTCGGCAAGGGAGACGGTGGGGTACACGCCGAATGACAGCAGCTTC 493170 Query 29593 TCCTTGCCGGCGATGCGGTACTTCCAGCGCCAGCTGCGCGCACCGGTCGGGGTGAGATAG 29652 ||||| | | | | ||||||||| |||||| || || ||| || || || || Sbjct 493171 TCCTTCCTGTCCACACGGTACTTCAGCCGCCAGTACCGGGCGCCGTTC-GGCTGCACCAG 493229 Query 29653 -AGGTACAGGCCGCCACCGTCGGTGATCTTCTGCGGTTTGTCGCTGGGCTTGG 29704 ||| ||||||||||||| ||| | |||| |||| ||||| ||||||||| Sbjct 493230 CAGGAACAGGCCGCCACCATCGAACAGCTTCAGCGGCTTGTCAGTGGGCTTGG 493282 Score = 82.4 bits (90), Expect = 2e-11 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 28897 GCCTGCCTGGACAGCGGCACCAGGTGCGCAGCACGCATCTTCAT-CTTGCTGGCAGGGAT 28955 |||||| ||||||||||| | || | || ||||||||| | | | | | ||||| Sbjct 492445 GCCTGCGATGACAGCGGCACGATATGGGGCGCCTTCATCTTCATGCGTTC-GCCGGGGAT 492503 Query 28956 GGTCCACACGGCCGCGTCGAGGTCGAACTCCTCCCATTCCGCATGCCGCAGTTCGCCAGG 29015 ||| | || |||| |||||||||||| ||| ||||| | || || || || || Sbjct 492504 ACGCCAGATTGCGCCGTCTAGGTCGAACTCCCGCCACTCCGCCTTGCGAAGCTCACCGGG 492563 Query 29016 ACGCAGGAACACCAGCGGCGCCAGCCGCAGCGCCGCGC-GTGTGATGGCAGATCCGCTGT 29074 |||| || ||||||||||||||| ||| | ||| | |||| | | |||||| Sbjct 492564 CCGCACAAAGACCAGCGGCGCCAGCTTCAG-GGCGCACAGTGTCACGTACTGGCCGCTGA 492622 Query 29075 ATGCCTCGATGGAGCGCAGCAGGCCACCCAGCTGCACGGGGTCAGTAATCGCCGCATGGT 29134 | | ||||| | |||||||| | || | || | ||||||| || || | || ||| Sbjct 492623 AGCCGTCGATAGCCCGCAGCAGTTCGCCGATCTTCGCGGGGTCGGTGATGGTGGCGCGGT 492682 Query 29135 GGG 29137 ||| Sbjct 492683 GGG 492685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128182335582576