Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq938 159 4e-34 seq29893 86.0 8e-12 >seq938 Length=1173706 Score = 159 bits (176), Expect = 4e-34 Identities = 376/565 (67%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| | ||||| || || || || || | ||||||||||| || Sbjct 1020756 GTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTTAATCCTGGCATGAGGCC 1020815 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||||||||| || || || || || || |||||||| |||||||| || || Sbjct 1020816 GCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGGAGAAGAATATCCCCTCAACGCA 1020875 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || || | ||| ||||||||||| || ||| | || | ||| | || Sbjct 1020876 AGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGA---TCCGTCGATCCAACGTAGGGC 1020932 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| ||||| ||||| | |||||||| || | || ||| ||||| |||| Sbjct 1020933 CCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATAGCTCGGAAGAGGCGACTCTT 1020992 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT 127830 || | | |||||||||||| | || | || || | ||| ||||| Sbjct 1020993 CTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGACTGTACATCTCGGAGTGGA--TG 1021050 Query 127831 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 ||| || ||| ||| | |||| || | |||||| ||| | ||| || || | Sbjct 1021051 TTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCTCGGAAACCTGGACTTCTTTC 1021110 Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 127948 || || | | |||||| ||||| || |||||||| ||||||| || ||||| Sbjct 1021111 ATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAGGCAGCAAAGAAGGCCAGA 1021170 Query 127949 ATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCCTTT 128008 | || || ||||| | || |||| | | |||| | ||||| | |||| |||| Sbjct 1021171 ACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCCCAGTGGGCGAGGTCCTGC 1021230 Query 128009 GAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAG 128068 || | |||||||||||| || |||||| | || |||||||| || | |||||| Sbjct 1021231 GACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCCTTCTTGTACATTTCCCAA 1021290 Query 128069 AGGTGGGGATACTTCAGGGGGAACA 128093 | || || |||| | |||||||| Sbjct 1021291 ATCTGAGGGTACTCAATGGGGAACA 1021315 >seq29893 Length=995234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| || ||||| |||||||| || ||||| || || || || | ||||||||| || Sbjct 40547 GAATCCGTCCATTTCAGTCAATAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCCGCC 40606 Query 12851 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 |||| || || | | ||| | || ||||| ||||| || ||||||||||| || Sbjct 40607 ---ACCAAGCCCTGCCCCTCTCTGCCTTCCAACGGCATCAATCTCATCAATGAAAACAAT 40663 Query 12908 ACACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 12966 || || || ||| || || || || | ||| | ||||| || || |||| Sbjct 40664 GCAAGG-TGCCTTTGACTTTGCTTTCTCGAATAAATCCCTGACTCTTGAAGCTCCAACAC 40722 Query 12967 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 13026 | ||||||| ||||||||| | | || | |||| || ||| || ||| || |||| Sbjct 40723 CTACAAACAGCTCCACAAATTCTGAAGCAGCACATGAGAAGAACGGAACGCCGGCCTCAC 40782 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | | | |||| ||| | ||||| || || || || ||| Sbjct 40783 CAGACACTGCTCTGGCCAAAAGGGTTTTTCCTGTACCCGGT 40823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610426228192320