Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq191313 87.8 1e-12 seq25458 86.0 4e-12 seq18673 86.0 4e-12 seq339907 84.2 2e-11 >seq191313 Length=592 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||||| | | || |||| ||| | ||| || ||||| || ||||||| Sbjct 108 CATC-CCGCCTCTGAGTCTCAACACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAAT 166 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | || || || ||||||||||||| |||||||| | Sbjct 167 CAGCTAGAGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTG 226 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | ||||| || || |||||| || | ||| | ||| ||| |||| ||| Sbjct 227 GGGGAATACCTTCCTTATCTTGAATTTTTGCCTTGA-CGTTGTCTATTGTATCTGAGCTC 285 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| || || || || || || || || || || || ||||||||| Sbjct 286 TCGACCTCCAATGTGATAGTCTTCCCGGTCAAGGTCTTCACAAATATCTGCATG 339 >seq25458 Length=394795 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 || || ||||| | ||| || |||| || | |||| || ||||| || || || || Sbjct 387844 TCACCACCTCGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 387785 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 || | ||| |||| || | || || || |||| || | | ||||||||| | Sbjct 387784 GCAAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGT 387725 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | |||||||||||| || || ||||| | | | || |||| || ||| Sbjct 387724 GGGATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCC 387665 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 387664 ACCTCCAACGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 387615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 || || ||||| | ||| || |||| || | |||| || ||||| || || || || Sbjct 385884 TCACCACCTCGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 385825 Query 39550 GCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 || || || || |||| || | || || || |||| || | | ||||||||| | Sbjct 385824 GC--AAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTG 385767 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||||||| || || ||||| | | | || |||| || | Sbjct 385766 GTGGGATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCTGAACTCT 385707 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 385706 CCACCTCCAACGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 385655 >seq18673 Length=525508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 || || ||||| | ||| || |||| || | |||| || ||||| || || || || Sbjct 497161 TCACCACCTCGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 497220 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 || | ||| |||| || | || || || |||| || | | ||||||||| | Sbjct 497221 GCAAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGT 497280 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | |||||||||||| || || ||||| | | | || |||| || ||| Sbjct 497281 GGGATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCTGAACTCTCC 497340 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 497341 ACCTCCAACGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 497390 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 || || ||||| | ||| || |||| || | ||| || ||||| ||||| || || Sbjct 459690 TCACCACCTCGGAGACGAAGCACCAGGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCA 459749 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 || | ||| |||| || | || || || |||| || | | ||||||||| | Sbjct 459750 GCAAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGT 459809 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | |||||||||||| || || ||||| | | | || || | | ||| Sbjct 459810 GGGATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCGGAACCCTCC 459869 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || |||||||| || ||||| |||||||| Sbjct 459870 ACCTCCAAAGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 459919 >seq339907 Length=279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 || || ||||| | ||| || |||| || | |||| || ||||| || || || || Sbjct 16 TCACCACCTCGGAGACGAAGCACCAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 75 Query 39550 GCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 || || || || |||| || | || || || |||| || | | ||||||||| | Sbjct 76 GC--AAGCGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGATCTG 133 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||||||| || || ||||| | | | || |||| || | Sbjct 134 GTGGGATGCCTTCTTTGTCTTGAATCTTAGCTTTAACATTATCAATGGTATCTGAACTCT 193 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 194 CCACCTCCAACGTGATCGTTTTCCCAGTTAAAGTCTTCACGAAAATCTGCAT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345668755990616