Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq24293 529 2e-145 seq1880 230 3e-55 seq32758 152 6e-32 seq5280 141 1e-28 seq27014 136 5e-27 seq32305 122 1e-22 seq28127 89.7 6e-13 >seq24293 Length=256785 Score = 529 bits (586), Expect = 2e-145 Identities = 689/948 (73%), Gaps = 10/948 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 206376 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 206318 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 |||| |||||||| || ||||| || ||||| || || || | ||||| || | || Sbjct 206317 ATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 206258 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | || || ||||| || ||||| ||||| || |||| | || ||||| Sbjct 206257 TCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 206198 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | ||||| ||||||||||||||||||||| | |||||||||||||| || || || Sbjct 206197 GGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGC 206138 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | || || | | |||||| | ||||| | | |||||||| | Sbjct 206137 GGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 206078 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || ||||| |||||||| ||||||||| || || Sbjct 206077 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 206018 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| ||| || ||||| | |||||| | ||||| || || ||| Sbjct 206017 CCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCT 205958 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| || || ||||||||||| |||||| | || ||||| || ||| Sbjct 205957 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAG 205898 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || ||||| || ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 205897 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 205838 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 205837 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 205778 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 205777 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 205718 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 205717 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 205658 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 ||||||| |||||||| | || ||||| || || | ||||| || || | ||| Sbjct 205657 TCATTACACTTTTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGT 205598 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GC 170279 || |||| ||||| |||||| | ||||||||||| || ||||||||||| |||||| || Sbjct 205597 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGC 205538 Query 170280 TAA---CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTAT 170336 || || || | | || |||| |||| || | ||| | || ||| | ||||| Sbjct 205537 CAAGGGCGTGTAATTAAT----ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTAT 205482 Query 170337 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||||||| | ||||| || |||||||| ||||| ||||| Sbjct 205481 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGC 205434 >seq1880 Length=405587 Score = 230 bits (254), Expect = 3e-55 Identities = 416/612 (68%), Gaps = 21/612 (3%) Strand=Plus/Minus Query 170955 TTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCA 171014 || ||||| ||||||||||| ||| |||||||||| ||||| || |||| ||| Sbjct 130677 TTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTAGTGTAGCA 130618 Query 171015 GCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTT 171074 || || ||||| | || | || | ||||| || || || ||| |||| |||||| Sbjct 130617 GCTATATTTCGATTCATACTCTTTTTTCAAGGATTTCATAATTGGACACTGAACCCATTT 130558 Query 171075 CACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCA 171134 || |||||||| ||||| || || | || | || || ||||| || ||||||||||| Sbjct 130557 CATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCT 130498 Query 171135 ACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGC 171194 || || | || || || | |||||| | | || || |||| Sbjct 130497 ACCGTAGAAAATACTTTATTTGAAGAT------GGTGATGGTGCAAATA----------- 130455 Query 171195 ACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCA 171254 |||||||||| ||| | || || || | ||||||||||| ||| | || || Sbjct 130454 ----CATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCT 130399 Query 171255 AACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTC 171314 ||| | || ||||| || || ||||| ||||||| || || ||| | | ||||| ||| Sbjct 130398 AACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 130339 Query 171315 CTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTA 171374 ||||||| || || || || | ||| | |||| || | || | || ||| | Sbjct 130338 TTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTG 130279 Query 171375 GCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCA 171434 || || ||||| | || || || || || ||||| || || | ||||| ||||| || Sbjct 130278 GCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCT 130219 Query 171435 GAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATG 171494 || || |||||||||||||| || ||||| || | || |||||||| | || |||||| Sbjct 130218 GAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGCTTGGATG 130159 Query 171495 TCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGT 171554 | | || || || ||||| ||| | ||||||| || || || ||||| | || Sbjct 130158 GCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGA 130099 Query 171555 AACGCACTTTAA 171566 ||||| |||||| Sbjct 130098 AACGCTCTTTAA 130087 >seq32758 Length=53022 Score = 152 bits (168), Expect = 6e-32 Identities = 214/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734 || || ||||||||| | || || | | |||||| | ||||| | | |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 169735 GGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATAC 169794 || | |||||||||| | | | | | ||||| |||||||| ||||||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 169795 TCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCA 169854 || || || || | ||||| ||| || ||||| | |||||| | ||||| || Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| ||||| || || ||||||||||| |||||| | || ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGG 169973 || ||||| ||||| || ||||| || || |||||| ||| ||||| || | ||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 141 bits (156), Expect = 1e-28 Identities = 183/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | ||| || || Sbjct 154334 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATT 154276 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 |||| |||||||| || ||||| || ||||| || || ||| | ||||| || | || Sbjct 154275 ATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGA 154217 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | || || || || || ||||| ||||| || |||| | | ||||| Sbjct 154216 TCTCTACTTTACGGAAAAAATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATT 154157 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | ||||| ||||||||||||||||||||| | |||||||||||||| || || || Sbjct 154156 GGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGC 154097 Query 169681 GGTCCTTAT 169689 ||||||||| Sbjct 154096 GGTCCTTAT 154088 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 169942 TTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGT 170001 || |||||| ||| ||||| || ||||||| || || ||||| | ||||||||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 170002 TCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGT 170061 || |||| ||||| | | || || ||||| ||| | | || || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 170062 TATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 170121 || | ||| | ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 170122 CGTCTTATCTTCCAGTATGCTTCATTCAACAACT 170155 || | ||||||| |||||| |||||||||| Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACT 175621 >seq27014 Length=84001 Score = 136 bits (150), Expect = 5e-27 Identities = 249/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 169729 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTT 169788 |||||||| | |||||||||| | | | | || ||||| |||||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 169789 GCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAG 169848 ||||| || | || | | ||||| ||| || ||||| | || ||| | ||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 169849 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTT 169908 | || ||||||| |||| | ||||| || || |||| ||||| |||||| | || Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 169909 TTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATG 169968 ||||| || ||||| ||||| || ||||| || || |||||| ||| ||||| || || Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG--TG 20149 Query 169969 T-TCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAG 170027 | |||| || || ||| | || ||||||||||| | || | ||| | | ||||| Sbjct 20150 TATCGGCGGCTCCCTAT-CAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAG 20208 Query 170028 AGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| | ||| | || || || | ||||| | || || ||||| |||||||| Sbjct 20209 GGAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq32305 Length=14517 Score = 122 bits (134), Expect = 1e-22 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 169447 TGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGC 169505 |||||||||||| | ||||| || |||| | || ||| | | ||| || || || | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTTC 12674 Query 169506 ATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTT 169565 ||||||| || |||| || ||||| || || || | ||||| || | || ||| | Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 169566 CTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACT 169625 | || || ||||| || ||||| ||||| || |||| | || ||||| || | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 169626 ACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCC 169685 ||||| || ||||||||||||||| || | |||||||||||||| || || | ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 169686 TTAT 169689 |||| Sbjct 12493 TTAT 12490 >seq28127 Length=41111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734 || || ||||||||| | || || | | |||||| | ||||| | | |||||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 169735 GGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATAC 169794 || | |||||||||| | | | | | ||||| |||||||| ||||||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 169795 TCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCA 169854 || || || || | ||||| ||| || ||||| | |||||| | ||||| || Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTA 169888 || |||||||||||||| ||||| || || |||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576304051239680