Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq24293 592 2e-164 seq1880 356 3e-93 seq32758 158 1e-33 seq27014 150 2e-31 seq5280 147 2e-30 seq32305 136 5e-27 seq28567 98.7 1e-15 >seq24293 Length=256785 Score = 592 bits (656), Expect = 2e-164 Identities = 728/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || || || || || | || ||||| || || | Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAA-AATCGTCTTTACATTGGATGGTTTGGTGTTTT 206358 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||| Sbjct 206357 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 206299 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 206298 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 206239 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||| ||||| || | ||| ||||| |||||||| | ||||| || || | Sbjct 206238 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAA 206179 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 |||||||||||||||| | ||||| ||||| || ||||| ||||||| || || ||| Sbjct 206178 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAG 206119 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | |||||||| ||||| ||||||||| | | Sbjct 206118 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 206059 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || | |||||||| || ||||| ||||||||| || || || || || || || | | Sbjct 206058 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCG 205999 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 |||| ||| | | || || | |||||||| ||||| ||||||| ||||| || |||| Sbjct 205998 CAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 205939 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | || || || ||||| | ||| | || ||||| ||||||||||| || || ||||| | Sbjct 205938 TTTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 205879 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | || || ||| | || || ||||| ||||| || ||| | || ||||||||||| | Sbjct 205878 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 205819 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | ||||| |||||| | | | || || || || |||| ||||| || | | Sbjct 205818 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 205759 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 |||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || | Sbjct 205758 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 205699 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 | || |||||||||||||| ||| ||||||||||| || || || ||||| ||||| | Sbjct 205698 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAG 205639 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| |||||||| || || |||||||| || || | || | ||| ||||| |||| Sbjct 205638 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCA 205579 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 |||| || |||||||| |||||||| || | ||||| | || || ||||| | || | Sbjct 205578 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATA 205519 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| | Sbjct 205518 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 205459 Query 168821 CACACAACTTCCCACTCGATCTTGCTGCT 168849 | || |||||||| || ||||| |||||| Sbjct 205458 CTCATAACTTCCCTCTAGATCTAGCTGCT 205430 >seq1880 Length=405587 Score = 356 bits (394), Expect = 3e-93 Identities = 448/615 (73%), Gaps = 0/615 (0%) Strand=Plus/Minus Query 169705 TGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATG 169764 |||||| |||||||| ||||| ||| || || || || ||||| || ||||| || Sbjct 130705 TGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTG 130646 Query 169765 GTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGG 169824 ||||||||| || ||| | ||| |||| || || | ||| | | || | ||||| Sbjct 130645 GTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATATTTCGATTCATACTCTTTTTTCAAGG 130586 Query 169825 ATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGG 169884 ||| || || ||||| |||| ||||| || |||||||| || || || | ||||||| Sbjct 130585 ATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGC 130526 Query 169885 AGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGA 169944 || ||| | | ||||| ||||||| ||| ||||| || || || | |||||| ||||| Sbjct 130525 TGCTTTGTTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 130466 Query 169945 GCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGT 170004 |||||||| ||| || ||| | | || || | ||||| |||||||| ||||| Sbjct 130465 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 130406 Query 170005 CACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCT 170064 ||| || |||||||| ||||| || ||||| || |||| ||||| || || |||||| | Sbjct 130405 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 130346 Query 170065 TCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTAT 170124 ||||| || ||||| ||||| || || | ||| | |||| || |||| | | Sbjct 130345 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 130286 Query 170125 TGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGA 170184 || | ||||| || || ||||| || || ||||| |||||| || | ||||| || Sbjct 130285 CGGTTTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGA 130226 Query 170185 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGC 170244 |||||| ||||||||||| |||||||||||||| || ||||| || ||||| ||||||| Sbjct 130225 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGC 130166 Query 170245 ATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||| |||| || ||||| || ||||||||| | || ||||| || || ||||| || Sbjct 130165 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 130106 Query 170305 GAGAGGTAACGCACT 170319 | || ||||| || Sbjct 130105 ACGTGGAAACGCTCT 130091 >seq32758 Length=53022 Score = 158 bits (174), Expect = 1e-33 Identities = 215/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 168136 AACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATG 168195 ||||| ||||||| || || |||| | |||||| | | ||| | | |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 168196 GGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATAC 168255 || ||||| ||||||||| | ||| | | |||||| || ||||| ||||||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 168256 TCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGT 168315 || || || || || || || | ||||| ||| | | || || | |||||||| ||| Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 168316 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 168375 || ||||||| ||||| || ||||| || || || ||||| | ||| || | ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATG-TATTCCAG 20759 Query 168376 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGG 168434 ||||||||||| || || ||||| || || || ||| | || || ||||| ||||| || Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq27014 Length=84001 Score = 150 bits (166), Expect = 2e-31 Identities = 251/359 (70%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 168190 TACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTT 168249 |||||||| ||||| ||||||||| | ||| | |||||||| || ||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 168250 GCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAA 168309 ||||| || | || | || || || | ||||| ||| | | ||||| | |||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 168310 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTC 168369 | ||||| ||||||| ||| | || ||||| || || | ||||| | ||| | || Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 168370 TTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTA 168429 ||||| ||||||||||| || || ||||| || || || ||| | || || ||||| ||| Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20151 Query 168430 TTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGA 168489 | || ||| | | ||||||||||| || ||||| | |||| | | | || Sbjct 20152 -TCGGCGGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 168490 GAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548 || || | |||| ||||| || | ||||||| || || ||||| |||||||| Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq5280 Length=204759 Score = 147 bits (162), Expect = 2e-30 Identities = 223/311 (72%), Gaps = 5/311 (2%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||| | ||| |||| | || | || || || || || | || ||||| || || | Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAA-AATCGTCTTTACATTGGATGGTTTGGTGTTTT 154316 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| | ||| || || | |||||| | ||||||| Sbjct 154315 GATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATTATTGCCTTCATTGCTGCTC 154257 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || ||| ||||||| || |||| || || | || || || | Sbjct 154256 CTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAA 154198 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||| ||||| || | ||| ||| | |||||||| | ||||| || || | Sbjct 154197 ATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAA 154138 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 |||||||||||||||| | ||||| ||||| || ||||| ||||||| || || ||| Sbjct 154137 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATAG 154078 Query 168161 TCTTTCACTTC 168171 | | |||||| Sbjct 154077 TTCTACACTTC 154067 Score = 129 bits (142), Expect = 7e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 168403 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 168462 || || ||| | || || ||||| || || || ||| | || ||| ||||||| || Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 168463 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 168522 || || |||||| | | |||| || || || ||| ||||| | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 168523 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 168582 |||| ||| | ||||| |||||||| || || |||||||||||||||||||| || || Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 168583 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 168642 || ||| |||||||||| ||| |||||||||| || | || | || ||| | | | Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGAT 175647 Query 168643 GCATGGCCTGTTGT 168656 | ||||||||||| Sbjct 175648 TCTTGGCCTGTTGT 175661 >seq32305 Length=14517 Score = 136 bits (150), Expect = 5e-27 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 167908 TGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGC 167966 ||||| || || ||||||| || || | ||| | |||||| ||||| || || | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTTC 12674 Query 167967 CTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACT 168026 |||| | | |||| | || || || || || || || |||||||| || |||| || || Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 168027 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACT 168086 | || || ||||| || ||||| ||||| || | ||| ||||| |||||||| | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 168087 TCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCC 168146 ||||| ||||| |||||||||||| |||| | ||||| ||||| || |||| ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 168147 TT 168148 || Sbjct 12493 TT 12492 >seq28567 Length=163623 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 168649 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAAC 168708 ||||| || || || ||||| || || | || | ||| ||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 168709 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 168768 |||||||| |||||||| || | ||||| | || || |||| | || | |||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 168769 GATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 168828 ||| || ||| | ||| | || ||||||||||||||||| || || || || ||| Sbjct 84047 GATATTT--AACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 168829 TTCCCACTCGATCTTGCTGCT 168849 ||||| || ||||| | |||| Sbjct 83989 TTCCCTCTAGATCTAGATGCT 83969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571588651028160