Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq24293 576 2e-159 seq27014 183 3e-41 seq32758 176 5e-39 seq5280 158 1e-33 seq32305 125 8e-24 seq28127 107 2e-18 seq28567 102 9e-17 seq1151 102 9e-17 >seq24293 Length=256785 Score = 576 bits (638), Expect = 2e-159 Identities = 722/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | || | ||||| |||| ||||| ||||| || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 206356 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 206298 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || |||||||| Sbjct 206297 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206238 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||||||||| || |||| |||| || || ||| | ||||| |||||||| Sbjct 206237 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAAT 206178 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | ||||| |||||||| || || |||||||| | || || | Sbjct 206177 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGT 206118 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 206117 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 206058 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| |||||||||| |||||| |||||||| || || | || || || Sbjct 206057 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGC 205998 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 ||| ||| | | |||||| | ||||| || ||| ||||||||||||||||||||||| Sbjct 205997 AGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || ||||| || ||| | |||||||| || ||||||||||| |||||||| || Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | ||||| |||||||| Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || || || | ||||| || || | ||||| | || ||||| ||||| Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTA 169388 | | || || || || || ||||||||||| || ||| | || || | | ||| || Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTG-TAATTAATA 205519 Query 169389 CATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 169448 | |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| | Sbjct 205518 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 205459 Query 169449 CTCACAACTTCCCACTAGACTTAGC 169473 |||| |||||||| ||||| |||| Sbjct 205458 CTCATAACTTCCCTCTAGATCTAGC 205434 >seq27014 Length=84001 Score = 183 bits (202), Expect = 3e-41 Identities = 258/359 (72%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 ||||||||| | |||||||| | | | | || |||||| |||||||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || |||||| | || | | || || ||||| ||| | | || ||| | ||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 | ||| ||||||| |||| |||||||||||||||| |||||| || ||| | ||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGG--TATTCAATTTTATGATTGTA 20091 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATG 169057 ||||| || ||||||||||| |||||||| || || || ||| ||| ||||| ||| | Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT- 20150 Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117 |||| || || ||| || || ||||||||||| | |||| ||| | | ||||| Sbjct 20151 ATCGGCGGCTCCCTA-TCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176 || || | || | |||||| || | ||||||| || |||||||| |||||||| Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq32758 Length=53022 Score = 176 bits (194), Expect = 5e-39 Identities = 219/299 (73%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATG 168823 || || |||||||| | || || | | |||||| || | || | || |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 168824 GGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTAT 168883 ||| | |||||||| | | | | || | |||| |||||||||| |||||| ||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 168884 TCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCT 168943 ||||| || || | || || ||||| ||| | | |||||| | ||||| || | Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || ||||||||||||||||||||||||||||| || ||||| || ||| | |||||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGG 169062 || ||||||||||| |||||||| || || || ||| ||| ||||| ||| | ||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 158 bits (174), Expect = 1e-33 Identities = 210/288 (73%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | || | ||||| |||| ||||| ||||| || Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | ||| || ||| |||| || |||||||| || Sbjct 154314 ATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATTATTGCCTTCATTGCTGCTCC 154256 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || ||| | |||||||| | || ||||| | || ||||| || Sbjct 154255 TCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAA 154197 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||||||||| || |||| ||| || || ||| | ||||| |||||||| Sbjct 154196 TATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAAT 154137 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 ||||||||||| | | ||||| |||||||| || || |||||||| Sbjct 154136 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTA 154089 Score = 143 bits (158), Expect = 3e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| ||||||| || || |||||| | ||||||||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || ||||||| ||| | | || || || || || | | |||||| | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| ||| ||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACT 169244 |||| ||||||| ||||| ||||||||||||| Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACT 175621 >seq32305 Length=14517 Score = 125 bits (138), Expect = 8e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 168536 TGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGC 168594 ||||| ||||| || |||||||| ||||| || ||| | | ||| || ||| || | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTTC 12674 Query 168595 ATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCT 168654 || |||| ||| | || || ||||| || || || | |||||||| | || |||| Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 168655 AATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCT 168714 | | || |||||||| || ||||||||||| || |||| |||| || || ||| | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 168715 ACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCC 168774 ||||| || ||||| ||||||||| | | | ||||| |||||||| || | ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 168775 TTA 168777 ||| Sbjct 12493 TTA 12491 >seq28127 Length=41111 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATG 168823 || || |||||||| | || || | | |||||| || | || | || |||||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 168824 GGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTAT 168883 ||| | |||||||| | | | | || | |||| |||||||||| |||||| ||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 168884 TCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCT 168943 ||||| || || | || || ||||| ||| | | |||||| | ||||| || | Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGG 168975 || ||||||||||||||||||||||||||||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGG 29703 >seq28567 Length=163623 Score = 102 bits (112), Expect = 9e-17 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | ||||| | || ||||| |||||| | || || || || || ||| Sbjct 84152 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 84093 Query 169352 CAATCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAG 169410 |||||||| || ||| | || ||| | | ||| | | |||| ||| || ||||| | Sbjct 84092 CAATCAGTAGTTGATAGCCAAGGGTGTG-TAATTAATTCTTGGGATGA--TATTTAACTG 84036 Query 169411 AGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 || |||| ||| |||||||| |||||||| || || ||||| |||||||| ||||| Sbjct 84035 TGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAACTTCCCTCTAGA 83979 >seq1151 Length=20901 Score = 102 bits (112), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | || | ||||| |||| ||||| ||||| || Sbjct 11230 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACTTTGGATGGTTTGGTGTTTTT 11289 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || | | | | ||| || ||| |||| || |||||||| || Sbjct 11290 ATGATCCCTGCCTTATTGACCGAAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 11348 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || |||||||| | || ||||| | || |||||||| Sbjct 11349 TCCAGTAGATATTGATGGTATTCATGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 11408 Query 168670 CATCATCTCAGGTGC 168684 || ||||||||||| Sbjct 11409 TATTATCTCAGGTGC 11423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561607030728960