Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq24293 497 1e-135 seq1880 224 1e-53 seq32758 132 6e-26 seq5280 131 2e-25 seq28567 122 1e-22 seq32305 109 6e-19 >seq24293 Length=256785 Score = 497 bits (550), Expect = 1e-135 Identities = 684/954 (72%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | |||||||| || | || ||| | | | Sbjct 206382 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTAT 206323 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||||| || ||||| || ||||| || || || | ||||| ||| Sbjct 206322 TTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 206263 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||| | | || || ||||| || ||||| ||||| || |||| | || | Sbjct 206262 CTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAG 206203 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | || ||| | ||||| ||||| ||||||||||||||| |||| ||||||||||| |||| Sbjct 206202 CTATTGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACA 206143 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 | || ||||||||| | || || | | |||||| | | ||| | | ||||||| Sbjct 206142 ACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGG 206083 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | |||||||||| | | | | |||||| |||| ||||| ||| ||||||| Sbjct 206082 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATT 206023 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| ||||| | || || || || ||| | | || ||| | ||||| || | Sbjct 206022 CAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTT 205963 Query 172274 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAG 172333 | |||||||||||||| ||||| || || ||||| ||||| |||||| | || ||||| | Sbjct 205962 TTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTCCAGG 205903 Query 172334 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAG 172393 | ||||| ||||| || ||||| || || |||||| ||| ||||| || | || || | Sbjct 205902 CTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 205843 Query 172394 GATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAA 172453 | || ||||| || ||||| ||||| || || || ||| | | ||||| || || | Sbjct 205842 GCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 205783 Query 172454 CTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACA 172513 | ||| ||||| || | || |||| ||||| ||||| |||||||| || || | Sbjct 205782 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATA 205723 Query 172514 TAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACT 172573 | ||||| || || ||||| ||||| || | |||||||| |||||| ||||||||||| Sbjct 205722 TCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 205663 Query 172574 CAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTA 172633 | | | ||||| |||||||| | || ||||| || || | ||||| || || Sbjct 205662 CTCGTTCATTACACTTTTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTT 205603 Query 172634 TGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAG 172693 | ||||| | || ||||| |||||||| || |||||||| |||||||||||||| || | Sbjct 205602 TAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 205543 Query 172694 AT-GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGT 172752 || || || || | | || ||| |||| ||| || ||||| | || ||||| ||| Sbjct 205542 ATAGCCAAGGGCGTG-TAATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGT 205484 Query 172753 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 |||||||||||||||||| | ||||| || |||||||| |||| || ||| || Sbjct 205483 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTAGCTGCT 205430 >seq1880 Length=405587 Score = 224 bits (248), Expect = 1e-53 Identities = 411/606 (68%), Gaps = 21/606 (3%) Strand=Plus/Minus Query 173383 ATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 173442 || || |||||||||||| |||||||||| |||||| || |||| ||||| || Sbjct 130671 ATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATA 130612 Query 173443 TTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATG 173502 ||||| | || | || | ||||| || || || ||| |||| |||||||| ||| Sbjct 130611 TTTCGATTCATACTCTTTTTTCAAGGATTTCATAATTGGACACTGAACCCATTTCATATG 130552 Query 173503 ATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTG 173562 ||||| ||||| || || | || | || || |||| || ||||||||||| || || Sbjct 130551 ATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCTACCGTA 130492 Query 173563 CAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACT 173622 | || || || | |||||| | ||| ||| | | || Sbjct 130491 GAAAATACTTTATTTGAAGA------------TGGTGATGGTGCAAAT---------ACA 130453 Query 173623 TTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGA 173682 ||| | || ||| | || || || | |||||||||||| ||| | || || ||| | Sbjct 130452 TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAACCGC 130393 Query 173683 TTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATG 173742 || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| | ||| Sbjct 130392 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 130333 Query 173743 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTT 173802 || || ||||| || | ||| | |||| | | || | || ||| | || || Sbjct 130332 TTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCTCTG 130273 Query 173803 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTC 173862 ||||| | || || ||||| || ||||| || || | ||||| |||||||| || || Sbjct 130272 AACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTT 130213 Query 173863 GAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 173922 |||||||||||||| || ||||| || | || |||||||| | || |||||| | || Sbjct 130212 GAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGCTTGGATGGCGGCT 130153 Query 173923 GTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCA 173982 |||||| || ||||| ||| | |||| || || || || ||||| | || ||||| Sbjct 130152 CAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCT 130093 Query 173983 CTTTAA 173988 |||||| Sbjct 130092 CTTTAA 130087 >seq32758 Length=53022 Score = 132 bits (146), Expect = 6e-26 Identities = 204/290 (70%), Gaps = 1/290 (0%) Strand=Plus/Minus Query 172093 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATG 172152 || || ||||||||| | || || | | |||||| | | ||| | | |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 172153 GGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATAT 172212 || | |||||||||| | | | | | |||| |||| ||||| ||| |||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 172213 TCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCA 172272 ||||| ||||| | || || || || ||| | | || ||| | ||||| || Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| || || ||||| ||||| |||||| | || ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 || ||||| ||||| || ||||| || || |||||| ||| ||||| || Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 20709 >seq5280 Length=204759 Score = 131 bits (144), Expect = 2e-25 Identities = 182/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | |||||||| || | || ||| | | Sbjct 154340 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTTTGTAT 154281 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || |||| |||||||| || ||||| || ||||| || || ||| | ||||| ||| Sbjct 154280 TTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATC-GTGAACCTGTTT 154222 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | || ||| | | || || || || || ||||| ||||| || |||| | | | Sbjct 154221 CTGGATCTCTACTTTACGGAAAAAATATTATCTCAGGTGCCATTATTCCTACTTATGCAG 154162 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | || ||| | ||||| ||||| ||||||||||||||| |||| ||||||||||| |||| Sbjct 154161 CTATTGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACA 154102 Query 172094 ATGGTGGTCCTTAT 172107 | || ||||||||| Sbjct 154101 ACGGCGGTCCTTAT 154088 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || |||| || || || ||||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | || || || || || || ||||| | || | || Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| ||| | ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACT 172573 || | ||||||| |||||| ||||||||||| Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACT 175621 >seq28567 Length=163623 Score = 122 bits (134), Expect = 1e-22 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 172606 CCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 172665 ||||| || || | ||||| || || | ||||| | || ||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 172666 GGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGG 172724 |||||||| |||||||||||||| || ||| || || ||| | | || | | |||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTG-TAATTAATTCTTGGGA 84049 Query 172725 TGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAA 172784 ||| | ||||| | || |||| || |||||||||||||||||| ||||||| || || Sbjct 84048 TGA--TATTTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAA 83991 Query 172785 CTTCCCATTAGACCT 172799 |||||| |||| || Sbjct 83990 CTTCCCTCTAGATCT 83976 >seq32305 Length=14517 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171925 TTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 171984 ||||||| || |||| || ||||| || || || | ||||| ||| | || ||| | Sbjct 12672 TTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTA 12613 Query 171985 TTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTC 172044 | || || ||||| || ||||| ||||| || |||| | || || || ||| | Sbjct 12612 CTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTG 12553 Query 172045 CACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCT 172104 ||||| || || |||||||||||| || |||| ||||||||||| ||||| | |||||| Sbjct 12552 CACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCCT 12493 Query 172105 TAT 172107 ||| Sbjct 12492 TAT 12490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585098065678720