Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq24293 580 1e-160 seq1880 389 4e-103 seq27014 196 5e-45 seq5280 181 1e-40 seq32758 178 1e-39 seq32305 163 3e-35 seq28127 107 2e-18 >seq24293 Length=256785 Score = 580 bits (642), Expect = 1e-160 Identities = 712/979 (73%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | |||||||| | || ||||| || | || ||||| || ||| ||||||||||| Sbjct 206407 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 206348 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || || |||||| | | ||||||||| || || Sbjct 206347 ACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 206289 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | || || ||||| || ||||| Sbjct 206288 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTC 206229 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||||| ||||||||| | ||||| || || ||||||||||| Sbjct 206228 AGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGC 206169 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 |||| || | || || ||||| ||||| || ||||||| || | ||||| | ||||| Sbjct 206168 AGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCTACACTT 206109 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || |||||||||||||||||||| || |||||| ||||| Sbjct 206108 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 206049 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || | || || ||| | Sbjct 206048 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTT 205989 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 | || || | |||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 205988 GATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 205929 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||| | ||| |||| ||||| || |||||||||||||| |||||||| || || || Sbjct 205928 TTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 205869 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | || || ||||| ||||||||||| || || |||||||| ||||| ||||| |||| Sbjct 205868 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 205809 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 205808 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 205749 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| || ||||||||||| || || || |||| Sbjct 205748 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 205689 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || ||||||||||| || || | ||||| ||| | || || ||||| Sbjct 205688 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCTGCTTGGCC 205629 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || |||||||||| |||||||| || || Sbjct 205628 TGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGG 205569 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| |||||||| || | ||||||| || || | ||||||||| || Sbjct 205568 TTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATACTTGGGCTGA 205509 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | ||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 205508 TATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 205449 Query 168056 CCCTCTCGACCTTGCTGCT 168074 |||||| || || |||||| Sbjct 205448 CCCTCTAGATCTAGCTGCT 205430 >seq1880 Length=405587 Score = 389 bits (430), Expect = 4e-103 Identities = 455/615 (74%), Gaps = 0/615 (0%) Strand=Plus/Minus Query 168881 TGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTG 168940 |||||| || |||||||||||| || || || || || || || || || || |||| Sbjct 130705 TGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTG 130646 Query 168941 GTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGG 169000 ||| || || || ||| | || |||| || || |||||| | ||||| | ||||| Sbjct 130645 GTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATATTTCGATTCATACTCTTTTTTCAAGG 130586 Query 169001 ATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGG 169060 ||| ||||| ||||||||||| ||||||||||||||||| || || ||| | ||||| | Sbjct 130585 ATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGC 130526 Query 169061 AGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGA 169120 || ||| | | || |||||||||| ||| ||||| |||||| | | | |||||||||| Sbjct 130525 TGCTTTGTTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 130466 Query 169121 ACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGT 169180 |||||||| ||| || ||| || ||||| | || || || ||||| ||||| Sbjct 130465 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 130406 Query 169181 TACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTT 169240 || || ||||| || ||||| || |||||||| |||| || ||||| | ||||| Sbjct 130405 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 130346 Query 169241 GCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTAT 169300 |||||||||||| | ||||| || || | ||| | |||| ||| | | || | | Sbjct 130345 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 130286 Query 169301 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGA 169360 ||| | ||||| ||||| ||||| |||||||| ||||| || || || | ||||| || Sbjct 130285 CGGTTTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGA 130226 Query 169361 AGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGC 169420 |||||| || |||||||| ||||||||||| || || || || ||||||||| ||||||| Sbjct 130225 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGC 130166 Query 169421 ATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCC 169480 ||| | || || ||||| |||||||| ||| || | ||||||||||| || || || Sbjct 130165 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 130106 Query 169481 CCGAGGTAATGCCCT 169495 || || || || || Sbjct 130105 ACGTGGAAACGCTCT 130091 >seq27014 Length=84001 Score = 196 bits (216), Expect = 5e-45 Identities = 261/359 (73%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 || |||||||||||||||||||| || |||||| |||||||| || ||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || |||| | || || || | || || ||| | | ||||| | |||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTC 167594 | ||| ||||| | ||| |||| || || |||||| |||||| | ||| |||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGT--ATTCAATTTTATGATTGTA 20091 Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 ||||| || |||||||||||||| |||||||| || || ||| | || || ||||| ||| Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20151 Query 167655 TTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGT 167714 ||||||| || || ||||||| ||||| ||||| |||| | ||| || | | Sbjct 20152 -TCGGCGGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGAC 167773 ||||||| |||| ||| || || | ||||||| || ||||| || ||||| || Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq5280 Length=204759 Score = 181 bits (200), Expect = 1e-40 Identities = 228/309 (74%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | |||||||| | || ||||| || | || ||||| || ||| ||||||||||| Sbjct 154365 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 154306 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| | ||| || || || |||||| | | ||||||||| || || Sbjct 154305 ACCTTATTGACCGCAACTTT-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 154247 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || ||||||||| | ||||| ||| |||| || || | || || || || || ||||| Sbjct 154246 TATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATTATCTC 154188 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||| | ||||||||| | ||||| || || ||||||||||| Sbjct 154187 AGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGC 154128 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 |||| || | || || ||||| ||||| || ||||||| || | ||||| | ||||| Sbjct 154127 AGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATAGTTCTACACTT 154068 Query 167396 CCTGATTGG 167404 | | |||| Sbjct 154067 CTTACTTGG 154059 Score = 136 bits (150), Expect = 4e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 167628 TTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGT 167687 || || ||| | || || ||||| || |||||||| || || |||||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 167688 TCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGT 167747 || | || || ||| || || | |||||||| ||| ||| || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 167748 TACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGT 167807 |||| ||| |||| || ||||| || ||||| ||||| || ||||||||||| || || Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 167808 CGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCA 167867 || || |||||||||| || |||||||||| || | | | || ||||| | Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGAT 175647 Query 167868 GCATGGCCTGTTGTT 167882 | |||||||||||| Sbjct 175648 TCTTGGCCTGTTGTT 175662 >seq32758 Length=53022 Score = 178 bits (196), Expect = 1e-39 Identities = 220/300 (73%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATG 167420 || || ||||||| || | ||||| | |||||| | |||| | | || ||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || |||||| | |||||| || ||||| ||||||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 167540 || ||||| || || || || | || || ||| | | || || | |||||||| | Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600 || ||||| | |||||||| || || |||||||| ||||| | ||| ||| ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG-ATGTATTCCAG 20759 Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGC 167660 || |||||||||||||| |||||||| || || ||| | || || ||||| ||||||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 20699 >seq32305 Length=14517 Score = 163 bits (180), Expect = 3e-35 Identities = 183/242 (76%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 167133 TGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGC 167191 ||||| || ||| ||||||||||||| || | | ||||| ||||| || || || | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTTC 12674 Query 167192 CTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACT 167251 |||| | | |||| |||| || || || |||||||| || ||||| ||| |||| || || Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 167252 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCT 167311 | || || ||||| || ||||| ||||| || ||||| ||||| ||||||||| | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 167312 TCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCC 167371 ||||| ||||| |||||||||||| || || | || || ||||| ||||| | ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 167372 TT 167373 || Sbjct 12493 TT 12492 >seq28127 Length=41111 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATG 167420 || || ||||||| || | ||||| | |||||| | |||| | | || ||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || |||||| | |||||| || ||||| ||||||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 167540 || ||||| || || || || | || || ||| | | || || | |||||||| | Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTA 167574 || ||||| | |||||||| || || ||||||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557792682684800