Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq24293 511 7e-140 seq27014 187 4e-42 seq32758 176 7e-39 seq5280 136 6e-27 seq32305 102 1e-16 >seq24293 Length=256785 Score = 511 bits (566), Expect = 7e-140 Identities = 693/966 (72%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 206395 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 206336 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 206335 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 206276 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | || || ||||| || ||||| ||||| || | Sbjct 206275 CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATT 206216 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| ||||||||||||||| | ||||| Sbjct 206215 CCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGAT 206156 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| || | | | | |||||| | ||||| | Sbjct 206155 GAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTA 206096 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| |||||||||| Sbjct 206095 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 206036 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||||| ||| | | || ||| | Sbjct 206035 GCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATA 205976 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||||||| |||||| || ||||| ||||| || ||||| | ||| Sbjct 205975 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 205916 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| |||||||||||||| ||| Sbjct 205915 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCT 205856 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 205855 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 205796 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| ||||| |||||||| Sbjct 205795 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 205736 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 205735 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 205676 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | ||||| ||||| || || | ||||| | ||||| Sbjct 205675 AGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCTGCTTGGCCTGTAGTGGGTATC 205616 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| |||||||| || |||||||| |||||| Sbjct 205615 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 205556 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || || || ||| ||||||||| || || ||||| | Sbjct 205555 CAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATACTTGGGCTGATATTATTAACCGT 205496 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| |||||||| |||| | Sbjct 205495 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATCTA 205436 Query 216275 GCTGCT 216280 |||||| Sbjct 205435 GCTGCT 205430 >seq27014 Length=84001 Score = 187 bits (206), Expect = 4e-42 Identities = 251/346 (73%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| |||||||||| |||||| || || | | Sbjct 19927 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAACTC 19986 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 || | | ||||| ||||| ||| | | |||||| | ||||| | ||| |||| Sbjct 19987 CTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAAGCAAGTTTTTCTG 20046 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||| | || ||||| ||||| | ||||| | ||| |||| ||||||||||||| Sbjct 20047 ATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTATTCCAGGCTGAGC 20104 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || ||||||||||| |||||||||||||| |||||||| |||| || || Sbjct 20105 ACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT-ATCGGCGGCTCCC 20163 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGC 215933 | || ||| ||||| ||||| | || | ||| | | ||||| || || | || Sbjct 20164 T-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAGAAA 20222 Query 215934 AAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC 215979 | |||||| || | ||||||| || || |||||||| ||||| Sbjct 20223 ATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq32758 Length=53022 Score = 176 bits (194), Expect = 7e-39 Identities = 179/232 (77%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | | |||| |||||||||| |||||| || || || | Sbjct 20930 AGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 20871 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| ||||| ||| | | || ||| | ||||| || ||| |||| Sbjct 20870 CTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTG 20811 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||| ||||| || ||||| | ||| | || ||||||||||||| Sbjct 20810 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAGGCTGAGC 20752 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGG 215865 ||||||| || ||||||||||| |||||||||||||| |||||||| ||||| Sbjct 20751 ACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 136 bits (150), Expect = 6e-27 Identities = 192/266 (72%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 154353 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 154294 Query 215375 GCTACCACTTGT-TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || |||| || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 154293 GCAACTT-TTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 154235 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | | || || ||| |||| ||| || | || || || || || ||||| ||||| || | Sbjct 154234 C-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATTATCTCAGGTGCCATTAT 154176 Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553 |||| || || || || || ||||| ||||| ||||||||||||||| | ||||| Sbjct 154175 TCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 154116 Query 215554 CGAATGGCTCTACAATGGTGGACCTT 215579 |||||| | ||||| || || |||| Sbjct 154115 TGAATGGTTATACAACGGCGGTCCTT 154090 Score = 136 bits (150), Expect = 6e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGG 215892 ||| |||||||||||||| |||||||| ||||| || || | ||| | | ||||| || Sbjct 175407 ATTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGG 175466 Query 215893 TTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGG 215952 ||| |||| || ||| | | || || || || || | | |||||| | || | || Sbjct 175467 TTCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGG 175526 Query 215953 TTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGG 216012 ||||| ||| | |||||||| ||||| || || |||||||| || || ||||| ||||| Sbjct 175527 TTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 175586 Query 216013 TCGCCTCATCTTCCAATACGCATCTTTCAACAACT 216047 || | |||||||||| || ||||||||||| Sbjct 175587 ACGATTGTTCTTCCAATATGCTAGTTTCAACAACT 175621 >seq32305 Length=14517 Score = 102 bits (112), Expect = 1e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 215339 TGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCA 215398 ||||||||||| | ||||| ||| | | | | || || || || || | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTTCC 12673 Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 ||||| | ||| |||| || ||||| || || || | || || ||| |||| ||| || Sbjct 12672 TTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTA 12613 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | || || ||||| || ||||| ||||| || | |||| ||| || || || || Sbjct 12612 CTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTG 12553 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 ||||| || || |||||||||||| || | ||||| |||||| | ||||| | || ||| Sbjct 12552 CACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCCT 12493 Query 215579 T 215579 | Sbjct 12492 T 12492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741339874712960