Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq24293 524 9e-144 seq32758 176 5e-39 seq27014 165 9e-36 seq5280 123 3e-23 seq32305 111 2e-19 seq28127 102 9e-17 >seq24293 Length=256785 Score = 524 bits (580), Expect = 9e-144 Identities = 697/968 (72%), Gaps = 0/968 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || |||| ||||| ||||| ||||||||||| Sbjct 206407 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 206348 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || ||||| || || || Sbjct 206347 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 206288 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || ||||| Sbjct 206287 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCA 206228 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || ||||||||| Sbjct 206227 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGCA 206168 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || ||||| ||||||||| ||||| | | | |||||| Sbjct 206167 GCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCTACACTTC 206108 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 206107 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 206048 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || | || || ||| || ||||| Sbjct 206047 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTG 205988 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| ||| || || || ||||||||||| || || ||||| Sbjct 205987 ATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACT 205928 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || || || ||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 205927 TTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 205868 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 205867 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 205808 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 205807 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 205748 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 205747 GGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 205688 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | ||||| ||||| ||| | | ||| Sbjct 205687 TTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCTGCTTGGCCT 205628 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||||| | |||||||| ||| | | |||||| |||| ||||| || ||||| ||||| Sbjct 205627 GTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGT 205568 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| ||| | || ||| | || ||| || ||| ||||| || Sbjct 205567 TTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATACTTGGGCTGAT 205508 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 205507 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 205448 Query 170659 CCACTTGA 170666 || || || Sbjct 205447 CCTCTAGA 205440 >seq32758 Length=53022 Score = 176 bits (194), Expect = 5e-39 Identities = 219/299 (73%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 ||||| ||||||||| ||||| | | | |||||| | | || | || |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | |||| | | |||||| |||||||| ||| |||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || | || || ||| || ||||| | || || | ||||| ||| | Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || || || || ||||||||||| || || ||||| || || || ||| | |||||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGG 170261 || ||||||||||| |||||||||||||| || ||| ||| || |||||| | ||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq27014 Length=84001 Score = 165 bits (182), Expect = 9e-36 Identities = 254/359 (71%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| | |||||||||| | |||| | |||||||| |||||||| ||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| |||| | | || || ||| || ||||| | ||||| | ||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 | | ||| || || | ||| ||||||| || || |||| || || || ||| | ||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATG 170256 ||||| || ||||||||||| |||||||||||||| || ||| ||| || |||||| | Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT- 20150 Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316 |||| || | || || || ||||| ||||| | |||| ||| | | ||||| Sbjct 20151 ATCGGCGGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAAC 170375 || || | ||| || || || || | || |||| ||| || ||||| |||||||| Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq5280 Length=204759 Score = 123 bits (136), Expect = 3e-23 Identities = 199/285 (70%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || |||| ||||| ||||| ||||||||||| Sbjct 154365 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 154306 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | ||||| |||| ||||| || ||||| || || || Sbjct 154305 ACCTTATTGACCGCAACTTTTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 154246 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| ||| | |||||||| | || || | | || || || || || ||||| Sbjct 154245 ATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATTATCTCA 154187 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| ||| || || ||| | ||||| || || || ||||||||| Sbjct 154186 GGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAATCTGGGAAGCA 154127 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983 ||| | | ||||| ||||| || ||||| ||||||||| || || Sbjct 154126 GCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATA 154082 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 170229 ATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGG 170288 ||| || ||| ||| || |||||| ||||||| || | || ||| | ||||| || Sbjct 175407 ATTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGG 175466 Query 170289 TTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGG 170348 ||| ||||||| ||| | | || || || || ||| | || || || | || | || Sbjct 175467 TTCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGG 175526 Query 170349 ATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGG 170408 |||| |||| | ||||| |||||||| || || || || || || ||||| || ||||| Sbjct 175527 TTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 175586 Query 170409 TAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || | |||||||||||||||| || ||||| Sbjct 175587 ACGATTGTTCTTCCAATATGCTAGTTTCAACAA 175619 >seq32305 Length=14517 Score = 111 bits (122), Expect = 2e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 169735 TGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCT 169794 ||||| ||||| ||||||||||| |||| | ||| | | ||||| || | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTTCC 12673 Query 169795 TTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTC 169854 ||||| | ||| | || || || || ||||| || | |||||||| | || || | Sbjct 12672 TTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTA 12613 Query 169855 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTC 169914 | || || ||||| || ||||| ||||| || |||| |||| || || ||| | Sbjct 12612 CTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTG 12553 Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974 ||||| ||||| || ||||||||| || | | ||||| ||||| || |||| |||||| Sbjct 12552 CACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCCT 12493 Query 169975 TATCAATTA 169983 ||| ||||| Sbjct 12492 TATGAATTA 12484 >seq28127 Length=41111 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 ||||| ||||||||| ||||| | | | |||||| | | || | || |||||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | |||| | | |||||| |||||||| ||| |||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || | || || ||| || ||||| | || || | ||||| ||| | Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 || || || || ||||||||||| || || |||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579920995628800