Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq104699 123 2e-23 seq28025 109 4e-19 seq25453 107 1e-18 seq23032 107 1e-18 seq7521 100 2e-16 seq191313 89.7 3e-13 >seq104699 Length=868 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | || ||||| |||||||| | || ||||||||| ||||| ||||| | Sbjct 842 CCACCACGCAGCCTCAGCACCAAGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCGGCC 783 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | |||| | || |||||||| || || ||||| || || | ||||||||| | || Sbjct 782 AAGGTTCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 723 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| |||||| ||| ||| | || | || | ||| || Sbjct 722 ATCCCTTCCTTGTCCTGAATCTTGGCTTTTACGTTATCAATGGTGTCGGAGCTCTCGACC 663 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| ||||| |||||||| ||||||||||||||| Sbjct 662 TCAAGGGTAATGGTTTTCCCCGTAAGAGTCTTTACAAAGATCTGCATA 615 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||||| |||||||| | ||| ||| ||||| ||||| ||||| | | | |||| | Sbjct 603 CCTCAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGGCC 544 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || ||||| |||||||| || || | | ||||||||| |||| | || ||||| Sbjct 543 GTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGCGGGATGCCTTCCTT 484 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGG 34941 ||| ||||| ||| || || ||||||| || | ||||| || | || Sbjct 483 GTCCTGGATCTTGGCTTTCAC--AT--TATCGATGGTGTCGGAGCTTTCAACCTCAAGGG 428 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || ||||| || ||||| || ||||||||||| Sbjct 427 TGATGGTCTTGCCCGTAAGGGTCTTAACGAAGATCTGCAT 388 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| | ||| | || |||| || Sbjct 368 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCG 309 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || || | ||||||||| | || | ||||||||||| Sbjct 308 AGCTGTTTACCCGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGG 249 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || |||| || || || || Sbjct 248 ATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGAGTGATCGTCTTC 189 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| || ||||||||||| Sbjct 188 CCCGTTAGGGTCTTGACGAAGATCTGCAT 160 >seq28025 Length=485539 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || ||||| || Sbjct 458293 TCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAG 458234 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | |||||||||||| ||||| |||||| Sbjct 458233 ATGAGGCGTTGCTGGTCCGGTGGTATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 458174 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| |||| ||| |||||||| || || || || |||||| Sbjct 458173 TCGATGGTGTCCGAGGATTCAACCTCGAGGGTGATGGTTTTCCCTGTTAGGGTTTTCACA 458114 Query 34971 AAGATCTGCATATTC 34985 ||||||||||||||| Sbjct 458113 AAGATCTGCATATTC 458099 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || ||||| || Sbjct 432302 TCCTTCTGGATGTTGTAGTCTGCGAGTGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAG 432243 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | |||||||||||| ||||| |||||| Sbjct 432242 ATGAGGCGTTGCTGGTCCGGTGGTATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 432183 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||||| |||| |||||| ||||| ||||| || || ||||| Sbjct 432182 TCGATGGTGTCCGAGGATTCAACCTCGAGGGTTATTGTTTTCCCCGTCAGGGTTTTCACG 432123 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 432122 AAGATCTGCAT 432112 >seq25453 Length=344677 Score = 107 bits (118), Expect = 1e-18 Identities = 145/197 (74%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || | ||| |||| |||| || ||||| ||||||||||| Sbjct 137488 TTCTTTCTGAATGTTGTAATCTGCCAGGGTTCGCCCATCTTCAAGCTGCTTTCCGGCAAA 137547 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGG 34908 ||||| | ||||| || | || | |||||||| || |||||| ||| || || Sbjct 137548 GATTAGCCTCTGCTGATCAGGAGGGATTCCCTCCTTATCCTGAATCTT-TGTCTTTAC-- 137604 Query 34909 ATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || |||| || ||| |||||| |||| || ||||| || || ||||||||| Sbjct 137605 AT--TATCAATTGTGTCAGAACTCTCAACCTCGAGTGTGATGGTCTTGCCAGTGAGAGTC 137662 Query 34965 TTCACAAAGATCTGCAT 34981 || |||||||| ||||| Sbjct 137663 TTGACAAAGATTTGCAT 137679 >seq23032 Length=1100947 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||||||| ||||| ||||| | ||| | ||| |||| || Sbjct 133652 ACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCT 133593 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| || || || | || ||||||||| | || | || |||||||| Sbjct 133592 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 133533 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| |||| | || || || || | ||| || || || Sbjct 133532 ATCTTGGCTTTGACGTTGTCTATGGTGTCGGAACTTTCCACCTCAAGGGTGATTGTCTTG 133473 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| |||||||||||||| Sbjct 133472 CCGGTGAGGGTCTTTACAAAGATCTGCAT 133444 Score = 107 bits (118), Expect = 1e-18 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| | |||||| |||| || ||| ||||| ||||||||||| | | |||| | Sbjct 133887 CCTGAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTATAGTCAGCCAATGTTCGGCC 133828 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||||||| |||||||| || || || | || || ||| | || | ||||||||| Sbjct 133827 ATCCTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGTTGATCTGGGGGAATCCCCTCCTT 133768 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGG 34941 ||| || || |||||| || | ||||| || | |||||| || | | Sbjct 133767 GTCCTGGATTTTAGCTTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCAACCTCAAGAG 133712 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 133711 TTATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 133672 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||||||| | ||||||||| | ||| ||| ||||| ||||| || || | Sbjct 134208 CCTCCCCTCAACCTAAGAACCAAGTGCAATGTCGATTCCTTCTGGATGTTGTAATCTGCC 134149 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | |||| |||| |||||||| || || || || || || | ||||||||| | || Sbjct 134148 AATGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 134089 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||| || ||| || | || | || | |||||| Sbjct 134088 ATTCCCTCCTTGTCCTGAATTTTAGCTTTCACATTGTCAATGGTGTCGGAGCTCTCAACC 134029 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | |||||||| || || || ||||||||||| || Sbjct 134028 TCAAGAGTTATGGTCTTCCCTGTTAGAGTCTTCACGAA 133991 >seq7521 Length=567817 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | || ||||| |||||||| | || ||||||||| ||||| ||||| | Sbjct 336894 CCACCACGCAGCCTCAGCACCAAGTGCAGAGTCGATTCTTTCTGGATGTTGTAGTCGGCC 336953 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | |||| | || || ||||| |||||||| || || | | ||||||||| |||| Sbjct 336954 AAGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGCGGG 337013 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||| || || ||||||| || | || Sbjct 337014 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCAC--AT--TATCGATGGTGTCGGAGCTTTC 337069 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| ||||| || ||||| || ||||| || ||||||||||| Sbjct 337070 AACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTAACGAAGATCTGCAT 337120 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||||||||| | ||| | || |||| || Sbjct 337368 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCATCCTCG 337427 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || || | ||||||||| | || | ||||||||||| Sbjct 337428 AGCTGTTTACCCGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGG 337487 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || |||| || || || ||| Sbjct 337488 ATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGAGTGATCGTCTTT 337547 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| || ||||||||||| Sbjct 337548 CCCGTTAGGGTCTTGACGAAGATCTGCAT 337576 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| | | | |||| | || || Sbjct 337140 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGGCCGTCTTCG 337199 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | | ||||||||| |||| | || |||||||| Sbjct 337200 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGG 337259 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| || || ||||||| || | ||||| || | ||| ||||| Sbjct 337260 ATCTTGGCTTTCAC--AT--TATCGATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGT 337315 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || ||||||||||| Sbjct 337316 CTTGCCCGTAAGGGTCTTAACGAAGATCTGCAT 337348 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 337614 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAG 337673 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||||| | || | ||| |||||||| ||| || ||||||| Sbjct 337674 ATCAGTCTTTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATTTTGGTTTTGACGTTG 337733 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || | ||| ||||| || || || | || |||||| Sbjct 337734 TCGATGGTGTCTGAGCTTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTTTTCACA 337793 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 337794 AAGATCTGCAT 337804 >seq191313 Length=592 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| | ||| ||||| |||| || ||||| || || ||||| Sbjct 375 TTCTTTCTGAATATTGTAGTCAGCAAGCGTTCGTCCATCTTCGAGCTGCTTCCCAGCAAA 434 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | || || ||||| ||| || || || Sbjct 435 GATCAATCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCCTGAATTTTTGCCTTAACATT 494 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||| | ||| ||| || |||| || ||||| ||||| |||||||| || || Sbjct 495 GTCTATGGTATCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCTGTGAGAGTTTTAAC 554 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 555 AAAAATCTGCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323044079461056