Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq24293 616 2e-171 seq27014 199 4e-46 seq32758 185 1e-41 seq5280 158 1e-33 seq32305 127 2e-24 seq28567 104 3e-17 seq28127 104 3e-17 seq1151 100 3e-16 >seq24293 Length=256785 Score = 616 bits (682), Expect = 2e-171 Identities = 729/985 (74%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 205434 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 205493 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 ||||| |||| | ||| ||||| ||||| | ||||| ||||||||| || | Sbjct 205494 GCACGGTTAATAATATCAGCCCAAGTATTAATTACACGCCCTTGGCTATCAACTACTGAT 205553 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| || || || ||||| ||||||| ||| | ||||| |||| Sbjct 205554 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAAC 205613 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 || || || || || ||||||||||| | ||||||||| | |||||| |||||||| Sbjct 205614 CAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGTTGAAA 205673 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||| |||||||| | || || || || || ||||| || || |||||||||||| Sbjct 205674 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 205733 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || ||||||||||| ||||||| | || || |||||||||| ||||| | | Sbjct 205734 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 205793 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||||||||| ||| |||||| | || ||||||||| Sbjct 205794 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 205853 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| || |||||||||||||| || || |||||||| ||| Sbjct 205854 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 205913 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||||| || || || || || || ||||| |||||||| ||| ||||| Sbjct 205914 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 205973 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | || || | | ||| || || | || || ||||| ||||| || || |||||| Sbjct 205974 CCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACA 206033 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| || |||||||| ||||| | ||||||||| ||||||||||||||| | Sbjct 206034 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 206093 Query 84633 AATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCAT 84692 | |||||| | |||||| | || | | || |||||| || || || |||| |||| Sbjct 206094 GCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATAACCAT 206153 Query 84693 TCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGAT 84752 || || | |||||||||||| || || || || || | ||||||||| ||| | Sbjct 206154 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAGAAGTA 206213 Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 |||| | |||||| || || || ||||||||||| | ||||| |||| || || ||| Sbjct 206214 GGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 206273 Query 84813 CGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGT 84871 || ||||| |||||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| Sbjct 206274 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGT 206332 Query 84872 GGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTT 84931 || | | || || || ||||| | | |||||||| |||| || | ||| || | Sbjct 206333 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTC 206392 Query 84932 AGTGGAGGTGACCCAATCACAGAAG 84956 ||| ||| | ||| | ||||||| Sbjct 206393 GGTGCTGGTTATCCAGTTACAGAAG 206417 >seq27014 Length=84001 Score = 199 bits (220), Expect = 4e-46 Identities = 263/361 (73%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 84269 AGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTC 84328 |||||| || |||||||| || ||||||| | || || |||||||| | ||||| Sbjct 20269 AGTTTCTTCCTCTTGACCTAATCTGTAACCTTCATTAGCAGATTCATTTTCTTTGGTTTC 20210 Query 84329 TCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAA 84388 | ||| | | |||| | || | ||||||||||| ||| || ||| | || |||| Sbjct 20209 CCTGATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTGA-TAGGGAGCCGCCGA- 20152 Query 84389 TACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||||| || || ||||||||||| || |||||||||||||| || || |||||||| Sbjct 20151 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 20092 Query 84449 GACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACC 84508 |||| ||| | ||||| | || || || || || | ||| ||||||| ||| | Sbjct 20091 TACAATCATAAAATTGAA--TACCAGAAATTCCTAGAGACATATCATCAGAAAAACTTGC 20034 Query 84509 TTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGC 84568 ||| || | ||||| | | ||| || || | || || |||| |||| || || || Sbjct 20033 TTGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGGCAATAGGAGTTGAATATGC 19974 Query 84569 AACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA 84628 |||| ||||| || |||||||| ||||| | ||||||||| |||||||||||||| Sbjct 19973 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 19914 Query 84629 A 84629 | Sbjct 19913 A 19913 >seq32758 Length=53022 Score = 185 bits (204), Expect = 1e-41 Identities = 221/299 (74%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443 |||||||||||||| || || ||||||||||| || |||||||||||||| || || ||| Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 ||||| ||| ||| | ||||| || || || || || || ||||| |||||||| ||| Sbjct 20760 TGGAATACAT-CATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 84504 GAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAG 84563 ||||| || | || || | | ||| || || | || || ||||| ||||| || Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 84564 TAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCC 84623 || |||||| ||||| || |||||| | ||||| | ||||||||| ||||||||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 84624 ATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATT 84682 |||||| | | |||||| | |||||| | || | | || |||||| || || || Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq5280 Length=204759 Score = 158 bits (174), Expect = 1e-33 Identities = 188/255 (74%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 84161 AACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATA 84220 ||| || ||||||| | | |||||||| | | ||||| |||||||| |||||| Sbjct 175662 AACAACAGGCCAAGAATCTAAGAAAAATTTTAATTAACGAAAGTTGTTGAAACTAGCATA 175603 Query 84221 CTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTC 84280 ||||||| | || || || || || ||||| || || |||||||||||||| || || Sbjct 175602 TTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTC 175543 Query 84281 TTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGA 84340 ||||| ||| ||||||| | || | || |||||| ||| ||||| | || | | Sbjct 175542 TTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATGTGGTTTCCCTAATCAAACT 175483 Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400 |||||| |||| ||||||||||| | | |||||| | || ||||| |||||||| || Sbjct 175482 AGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAACACACCAGCTAC 175423 Query 84401 TCCCAACATGTGAAA 84415 || ||||||||||| Sbjct 175422 ACCTAACATGTGAAA 175408 Score = 145 bits (160), Expect = 9e-30 Identities = 227/321 (71%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 84637 CACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGT 84696 |||||| | |||||| | || | | || |||||| || || || |||| |||||| | Sbjct 154057 CACCAAGTAAGAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCAT 154116 Query 84697 CCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAA 84756 | | |||||||||||| || || || || || | ||||||||| | | | |||| Sbjct 154117 CAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCATAAGTAGGAA 154176 Query 84757 CTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGA 84816 | |||||| || || || || |||||||| | ||||| |||| || || |||| || Sbjct 154177 TAATGGCACCTGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCAC-GA 154235 Query 84817 TACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCA 84875 |||| |||||||| ||||| || ||| ||| ||| ||||| || || ||| | ||| || Sbjct 154236 TACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-AAAGTTGCG 154294 Query 84876 GCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTG 84935 | | || || || ||||| | | |||||||| |||| || | ||| || | ||| Sbjct 154295 GTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 154354 Query 84936 GAGGTGACCCAATCACAGAAG 84956 ||| | ||| | ||||||| Sbjct 154355 CTGGTTATCCAGTTACAGAAG 154375 >seq32305 Length=14517 Score = 127 bits (140), Expect = 2e-24 Identities = 178/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 84665 TTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATA 84724 || |||||| || | || |||| |||||| || | || ||||||||| || ||||| Sbjct 12487 TTCATAAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATA 12546 Query 84725 GAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCC 84784 || || | ||||||||| ||| | |||| | |||||| || || || |||||||| Sbjct 12547 AAAGTGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCC 12606 Query 84785 GTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACC 84844 ||| | ||||| |||| || || ||||| ||||| |||||||| ||||| | ||| | Sbjct 12607 GTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAAC 12666 Query 84845 AACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTC 84903 || ||| | ||| || || ||||| ||| || | | || || || ||||| | | | Sbjct 12667 AATGAAGGAAATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 12725 Query 84904 CAAACCA 84910 ||||||| Sbjct 12726 CAAACCA 12732 >seq28567 Length=163623 Score = 104 bits (114), Expect = 3e-17 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 83976 AGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCA 84035 ||||| | ||||||||||| || || ||||| ||||| |||||||| ||| | ||| Sbjct 83976 AGATCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATGGTTAGCA 84035 Query 84036 CGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGA 84095 | |||| | ||| |||| | ||| | |||| ||||||||| || | || Sbjct 84036 CAGTTAA--ATATCATCCCAAGAATTAATTACACACCCTTGGCTATCAACTACTGATTGG 84093 Query 84096 TTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAA 84155 ||||| || || ||||| || || || ||||| ||||||| ||| | ||||| ||||||| Sbjct 84094 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAA 84153 Query 84156 ATGCCAACCACTGG 84169 || || || || || Sbjct 84154 ATACCCACTACAGG 84167 >seq28127 Length=41111 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 84471 CCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGG 84530 || || || || || ||||| |||||||| ||| ||||| || | || || | | | Sbjct 29703 CCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCAAG 29644 Query 84531 AATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATA 84590 || || || | || || ||||| ||||| || || |||||| ||||| || |||||| Sbjct 29643 AAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATA 29584 Query 84591 CCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAG 84650 | ||||| | ||||||||| ||||||||||||||| | | |||||| | |||| Sbjct 29583 TCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAG 29524 Query 84651 TGAAAGACAACAAGTTGATAAGGTCCACCATT 84682 || | || | | || |||||| || || || Sbjct 29523 TGTAGAACTATTAATTCATAAGGACCGCCGTT 29492 >seq1151 Length=20901 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACC 84820 |||||| || || || ||||||||||| | ||||| |||| || || ||| | ||||| Sbjct 11424 GGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCATGAATACC 11365 Query 84821 GTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAA 84879 |||||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| | | | Sbjct 11364 ATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGTTTCGGTCA 11306 Query 84880 GTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGG 84939 || | || ||||||| | |||||||| |||| || | ||| || | ||| || Sbjct 11305 ATAAGGCAGGGATCATAAAAACACCAAACCATCCAAAGTAAAGACGATTTTCGGTGCTGG 11246 Query 84940 TGACCCAATCACAGAAG 84956 | | ||| | ||||||| Sbjct 11245 TTATCCAGTTACAGAAG 11229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568404721108160