Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq24293 585 8e-163 seq32758 203 1e-47 seq27014 163 9e-36 seq5280 163 9e-36 seq32305 138 3e-28 seq1151 131 5e-26 seq28127 116 1e-21 seq28567 102 2e-17 seq16835 82.4 2e-11 >seq24293 Length=256785 Score = 585 bits (648), Expect = 8e-163 Identities = 727/992 (73%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||||||| || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 205430 AGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 205489 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 ||| |||||||| | | ||| |||||||| || | | || |||| ||||| Sbjct 205490 GTTAGCACGGTTAATAATATCAGCCCAAGTATTAATTACACGCCCTTGGCTA---TCAAC 205546 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 ||||| || ||||| || || || || || || |||||||||||| || || | || Sbjct 205547 TACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGC 205606 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 |||| ||| || | || || ||||||| ||| ||||| || ||||| ||| || Sbjct 205607 AGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTT 205666 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || |||||||| || || || || Sbjct 205667 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATT 205726 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||||||||| |||||| | || || | || ||| | | || || Sbjct 205727 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 205786 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | |||||| || | |||||||||||| ||| | | || || Sbjct 205787 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 205846 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || || ||||||||||| ||||| || ||||| Sbjct 205847 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 205906 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | |||||| || ||||||||||| || || ||||||||||||||| ||||| Sbjct 205907 GAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 205966 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787 ||| || || | ||||| | || || |||| | || |||||||| || |||||||| Sbjct 205967 TCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATA 206026 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 ||| || |||||| |||||||| || | | | ||||||||||||| | || |||| Sbjct 206027 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 206086 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 |||| || | ||||| | |||||| | || | | || || || || || ||||| Sbjct 206087 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTA 206146 Query 5908 AAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 | ||||||||| | ||| |||||||||||||| || || ||||| || ||||| || Sbjct 206147 TAACCATTCATCAACGGAT--GCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCT 206204 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCG 6025 || | || | || ||| ||||| || || |||||||| || ||||||||||| | Sbjct 206205 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 206264 Query 6026 ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAAT 6085 || |||||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 206265 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 206324 Query 6086 GCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGG 6145 ||| ||||||||| || | | || ||||| || ||||||||||| || | || || Sbjct 206325 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 206384 Query 6146 CGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | |||||| || | ||||| |||||| Sbjct 206385 CGATTTTCGGTGCTGGTTATCCAGTTACAGAA 206416 >seq32758 Length=53022 Score = 203 bits (224), Expect = 1e-47 Identities = 207/269 (77%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| || || ||||||||||| ||||| || ||| Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | |||||| || ||||||||||| || || ||||||||||||||| ||| Sbjct 20760 TGGAATAC-ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAA 5785 ||||| || || | ||||| | || || |||| | || |||||||| || |||||| Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCC 5845 ||||| || |||||| |||||||| | | | | ||||||||||||| | || ||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 5846 AAGTAAGCTGCGATACCAATAAGGAAGTG 5874 | |||| || | ||||| | |||||| Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTG 20967 >seq27014 Length=84001 Score = 163 bits (180), Expect = 9e-36 Identities = 202/273 (74%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| || | | || |||| ||| ||||| ||||| | |||||| || Sbjct 20181 CCATGCATAGCACTGAT-AGGGAGCCGCCGA-TACACCAGCTACACCTAACATGTGAAAT 20124 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || ||||||||||| | |||||| || || ||||||| Sbjct 20123 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAATTGAA--TACCAGAA 20066 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || |||| |||| ||||| |||||| | || || | || || | || || ||| Sbjct 20065 ATTCCTAGAGACATATCATCAGAAAAACTTGCTTGACCTATTGGATAAATCAAGAAAACT 20006 Query 5759 GAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAAT 5818 | | || ||||||| || | ||||||||| || |||||| |||||||| || | Sbjct 20005 GCGGTAGCAGCGGCAATAGGAGTTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGA 19946 Query 5819 CTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 | | ||||||||||||| | || |||| |||| Sbjct 19945 CGGAAACTAAGTTCCCACTCACGACCCATGTAA 19913 >seq5280 Length=204759 Score = 163 bits (180), Expect = 9e-36 Identities = 230/320 (72%), Gaps = 5/320 (2%) Strand=Plus/Plus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | | || || || || || ||||| | ||||||||| Sbjct 154058 ACCAAGTAAGAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCATC 154117 Query 5920 GA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGT 5977 | ||| |||||||||||||| || || ||||| || ||||| || | | || Sbjct 154118 AACGGAT--GCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCATAAGTAGGA 154175 Query 5978 ACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGT 6037 | || ||| ||||| || || || ||||| || ||||||||||| | || |||||||| Sbjct 154176 ATAATGGCACCTGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACG- 154234 Query 6038 ATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCG 6097 || || || || || ||||| || ||||| | ||| || | |||||| || ||||||| Sbjct 154235 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCG 154294 Query 6098 GTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTG 6157 || || | | || ||||| || ||||||||||| || | || || || || | |||| Sbjct 154295 GTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTG 154354 Query 6158 CTAGTAACCCAGTCACAGAA 6177 || || | ||||| |||||| Sbjct 154355 CTGGTTATCCAGTTACAGAA 154374 Score = 104 bits (114), Expect = 7e-18 Identities = 176/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 5383 AACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATA 5442 ||| || ||||||| | | | ||| || | ||| ||| ||||| || |||||||| Sbjct 175662 AACAACAGGCCAAGAATCTAAGAAAAATTTTAATTAACGAAAGTTGTTGAAACTAGCATA 175603 Query 5443 CTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTC 5502 ||||||| | || ||||| || |||||||| || || || ||||| ||||||||||| Sbjct 175602 TTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTC 175543 Query 5503 TTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGA 5562 ||| | |||| | || || | || | ||| | || ||||| | ||| | Sbjct 175542 TTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATGTGGTTTCCCTAATCAAACT 175483 Query 5563 AGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAAC 5622 |||||| |||| |||||||||| | ||| | | || ||||| || ||||| || Sbjct 175482 AGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAACACACCAGCTAC 175423 Query 5623 ACCGAGCATGTGGAA 5637 ||| | |||||| || Sbjct 175422 ACCTAACATGTGAAA 175408 >seq32305 Length=14517 Score = 138 bits (152), Expect = 3e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 5903 TTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960 ||||| | ||||||||| | ||| | |||||||||||| ||||| ||||| || |||| Sbjct 12503 TTGTATAACCATTCATCAACGGAT--GTTGCTTCCCAGATTGGATAAAAGTGCAAACCAA 12560 Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 | || || | || | || ||| ||||| || || |||||||| || |||||||||| Sbjct 12561 TAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATC 12620 Query 6021 CTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATA 6080 | | || |||||||| || || || || || ||||| | ||| | | ||| | | | Sbjct 12621 CAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAATGAAGGAAATAA 12680 Query 6081 TAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCA 6132 ||||| ||| ||||||||| || | | || ||||| || ||||||||||| Sbjct 12681 TAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 12732 >seq1151 Length=20901 Score = 131 bits (144), Expect = 5e-26 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 5983 GGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCC 6042 ||| ||||| || || |||||||| || ||||||||||| | || |||||| | || || Sbjct 11424 GGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCATGAATACC 11365 Query 6043 GTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAA 6102 || || || ||||| || ||||| | ||| || | |||||| ||| |||| |||| || Sbjct 11364 ATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTTCGGTCAA 11305 Query 6103 GAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGT 6162 | || || ||||| || ||||||||||| || | || || || || | |||||| || Sbjct 11304 TAAGGCAGGGATCATAAAAACACCAAACCATCCAAAGTAAAGACGATTTTCGGTGCTGGT 11245 Query 6163 AACCCAGTCACAGAA 6177 | ||||| |||||| Sbjct 11244 TATCCAGTTACAGAA 11230 >seq28127 Length=41111 Score = 116 bits (128), Expect = 1e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 5691 TACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTA 5750 ||||||| || || ||||||||||||||| |||||||| || || | ||||| | | Sbjct 29705 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCA 29646 Query 5751 AAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCA 5810 | || |||| | || |||||||| || ||||||||||| || |||||| ||||||| Sbjct 29645 AGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 29586 Query 5811 TTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGA 5870 | | | | | ||||||||||||| | || |||| |||| || | ||||| | || Sbjct 29585 TATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 29526 Query 5871 AGTG 5874 |||| Sbjct 29525 AGTG 29522 >seq28567 Length=163623 Score = 102 bits (112), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 5196 CTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGG 5255 ||||||| || |||||||| |||||||||||||| ||||| |||||||| ||| |||| | Sbjct 83974 CTAGATCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATGGTTAG 84033 Query 5256 CACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTG 5312 ||| ||| | | ||| |||||| || | | || |||| ||||| |||| Sbjct 84034 CACAGTTAA--ATATCATCCCAAGAATTAATTACACACCCTTGGCTA---TCAACTACTG 84088 Query 5313 ACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 5372 | || ||||| || || || || || || |||||||||||| || || | || |||| Sbjct 84089 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAA 84148 Query 5373 GCCATAT 5379 ||| || Sbjct 84149 ACCAAAT 84155 >seq16835 Length=343710 Score = 82.4 bits (90), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 5711 ATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCG 5770 ||||||||| ||||||| || || | ||||| | || || |||| | || ||| Sbjct 191685 ATACCATCAGAAAAACTTCTTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCG 191744 Query 5771 GCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGT 5830 ||||| || ||||||||||| || |||||| |||||||| || | | | |||||||| Sbjct 191745 GCAACAGGAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACTAAGT 191804 Query 5831 TCCCATTGGCGTCCCAAGTA 5850 | ||| | || |||| ||| Sbjct 191805 TTCCACTCACGACCCATGTA 191824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151921338525072