Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq24293 609 3e-169 seq27014 174 2e-38 seq32758 167 3e-36 seq5280 161 1e-34 seq32305 150 2e-31 seq28567 114 1e-20 seq28127 98.7 1e-15 >seq24293 Length=256785 Score = 609 bits (674), Expect = 3e-169 Identities = 728/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| || ||||| | || | || ||||| ||||| |||||| Sbjct 206413 TGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 206354 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || ||||| |||||||| || |||||| Sbjct 206353 ATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCA 206294 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || || || ||||| || Sbjct 206293 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATT 206234 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||||| ||||| | |||||| ||| ||||||||| | ||||| || || |||||| Sbjct 206233 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAATCTGG 206174 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||||||| | ||||||| ||||| || || || || |||| || | |||| | Sbjct 206173 GAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCTA 206114 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 206113 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 206054 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || || || || | || || ||| || Sbjct 206053 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTT 205994 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| | || || | |||||||| ||| ||||| | |||||||| || |||||| Sbjct 205993 TTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 205934 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || | ||| | || ||||| || |||||||||||||| |||||||| || Sbjct 205933 GGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 205874 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 205873 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 205814 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| ||||| || || | || || || | ||||| Sbjct 205813 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 205754 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || || |||||||| || ||||| || Sbjct 205753 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGA 205694 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| |||||||||||| |||||| | ||||| ||||| ||||| Sbjct 205693 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCTGCT 205634 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | |||||||| ||||| | ||| | |||||||| |||||||| Sbjct 205633 TGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 205574 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||||||||| || ||||| | ||| || || ||| |||| Sbjct 205573 AATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGT---GTAATTAATACT 205517 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 205516 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 205457 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || |||||||| || || || |||||| Sbjct 205456 CATAACTTCCCTCTAGATCTAGCTGCT 205430 >seq27014 Length=84001 Score = 174 bits (192), Expect = 2e-38 Identities = 253/354 (71%), Gaps = 4/354 (1%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | |||||||| |||||||| ||||||||| Sbjct 19920 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 19979 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || | || | | || || ||| || |||||| | ||||| | ||||||| | Sbjct 19980 TCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAAGCAAGT 20039 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | ||| |||| || |||||||||| || || | ||| | || ||||| Sbjct 20040 TTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTATTCCAG 20097 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||||||||||||| |||||||| || || ||| | || || || |||||| |||| Sbjct 20098 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA-TCGGC 20156 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 || || || | ||||||||||| ||||| | || | |||| | | ||||| ||||| Sbjct 20157 GGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACC 20215 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACT 163185 | || | || || || | ||||| | || || ||||| ||||| ||| Sbjct 20216 AAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAACT 20269 >seq32758 Length=53022 Score = 167 bits (184), Expect = 3e-36 Identities = 181/239 (76%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | | |||||| |||||||| ||||||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||| || |||||| | || || | |||||||| | Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || |||||||||||||| || | ||| | || ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGG 163070 || |||||||||||||| |||||||| || || ||| | || || || ||||||||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 161 bits (178), Expect = 1e-34 Identities = 220/306 (72%), Gaps = 1/306 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| || ||||| | || | || ||||| ||||| |||||| Sbjct 154371 TGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 154312 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | | || || ||||| |||||||| || |||||| Sbjct 154311 ATCCCTACCTTATTGACCGCAACTTTTGTATTTATTATTGCCTTCATTGCTGCTCCTCCA 154252 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| ||||||||| | ||||||||| | || || || || || || || || || Sbjct 154251 GTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATT 154193 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||||| ||||| | |||||| || ||||||||| | ||||| || || |||||| Sbjct 154192 ATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAATCTGG 154133 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||||||| | ||||||| ||||| || || || || |||| || | |||| | Sbjct 154132 GAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATAGTTCTA 154073 Query 162802 CACTTC 162807 |||||| Sbjct 154072 CACTTC 154067 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 163039 TTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGT 163098 || || ||| | || || || ||||| ||||| || || || || ||| ||||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 163099 TCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGT 163158 || |||| |||||| | | || || ||||| || | | || || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGT 163218 || | ||| | ||||| ||||| ||||| || || || || |||||||| || ||||| Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 163219 CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 || ||| ||||||| ||||| ||||||||||| |||| Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTT 175627 >seq32305 Length=14517 Score = 150 bits (166), Expect = 2e-31 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTTCC 12673 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||||| || ||||||| ||||| |||||||| | ||||||||| | || || || Sbjct 12672 TTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTA 12613 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || || || ||||| || ||||| ||||| | |||||| ||| ||||||||| | Sbjct 12612 CTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTG 12553 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783 ||||| ||||| |||||||||||| || | ||||||| ||||| || || | || ||| Sbjct 12552 CACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCCT 12493 Query 162784 T 162784 | Sbjct 12492 T 12492 >seq28567 Length=163623 Score = 114 bits (126), Expect = 1e-20 Identities = 149/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 163285 CCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAAC 163344 ||||| || | || ||||| ||||| | ||| | |||||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 163345 GGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGG 163401 |||||||| ||||||||||| || ||||| | ||| || || ||| | ||||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGT---GTAATTAATTCTTGG 84051 Query 163402 GCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 163461 | ||||| ||||| | || | ||| |||||||||||||| || || |||||||| Sbjct 84050 GATGATAT--TTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCAT 83993 Query 163462 AACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || || || | |||| Sbjct 83992 AACTTCCCTCTAGATCTAGATGCT 83969 >seq28127 Length=41111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | | |||||| |||||||| ||||||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||| || |||||| | || || | |||||||| | Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTA 162985 || ||||| | |||||||| || |||||||||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550307263442880