Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq29890 140 6e-28 seq938 129 1e-24 >seq29890 Length=111316 Score = 140 bits (154), Expect = 6e-28 Identities = 384/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||||| ||||| | ||||| |||||||| | | ||| | | |||| ||| Sbjct 72418 TAGAGCAAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAG 72477 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | ||| | || |||||||||||| || | ||| || Sbjct 72478 AAAGTCAGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGGAGCAGAAGCTTCCG 72537 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 || ||||| || || || || ||||| || | | ||| | || || | | Sbjct 72538 GAAAAGAATATACCTTCGACACAAGCGAAGGCCACTATTCGCTCCGCAAACGACTCCGAC 72597 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 || ||||||| || ||||| | |||||| ||| |||||| || || || || Sbjct 72598 CCCTC---GATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCG 72654 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA-- 48416 || || |||||||| ||||| ||| | | || | || || ||||| Sbjct 72655 ATCGCGTGGAAGAGCAGGTTCTT---CTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAG 72711 Query 48417 --GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGC 48474 ||| ||||||||| ||||| | |||||||| |||||||| || ||||||||||| Sbjct 72712 AGGCT----GTACATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGC 72767 Query 48475 CCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTAT 48534 || ||||| | ||||| || || | ||||| || || ||||| || || Sbjct 72768 CCGAGCCTCCGAGACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGAT 72827 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || || || || || |||||||| || || ||||| | |||||| ||||| || Sbjct 72828 GCCGTCGGATGCGGCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGT 72887 Query 48595 GAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA 48654 ||||| | |||| | | || | | || || || || || | ||||||||||| Sbjct 72888 AAGAGCGTCCCAGTGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGA 72947 Query 48655 CGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGTCTATC 48700 || ||||| |||||||| |||| || | || || | |||| Sbjct 72948 GGCTTCGGCTTTCTTGTACATCTCCCAGATTTGAGGGTACTGTATC 72993 >seq938 Length=1173706 Score = 129 bits (142), Expect = 1e-24 Identities = 327/489 (67%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || ||||| | ||||| || ||||| | ||| ||| ||||||| || Sbjct 1020738 CAGGCATGCGAAGTCGCAGTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGT 1020797 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||||| || | | || | ||| || || || ||| || ||||| Sbjct 1020798 TAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGGAGAA 1020857 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || ||||| || || || ||| |||| ||| | ||||| || ||| Sbjct 1020858 GAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGATCCGTC 1020917 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || ||||| | |||||||||| | |||||| | || || || || Sbjct 1020918 ---GATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATAGC 1020974 Query 48367 CCGGAAGAGCTTCTTGC-ACTCACCTGCGTCCGCAACATAG--GTA-GT---GAGCAGCT 48419 |||||||| || |||| || || ||| | | | | ||| || |||||| Sbjct 1020975 TCGGAAGAG------GCGACTCTTCT-CGGCCGAATCTTTGATGTATGTTTCGAGCAGAA 1021027 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 ||||||||| ||||| | ||||| || || |||||||| ||||| || || | | Sbjct 1021028 GACTGTACATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCG 1021087 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCA 48538 |||| | ||||| |||||| | ||| || ||||| |||||||| || || ||| Sbjct 1021088 CCTCGGAAACCTGGACTTCTTTCATGAACCTG-CCAGCTAGATTCTCCAAAACGATGCCA 1021146 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 || || |||||||||||||| || |||||||| | |||||| ||| | | ||||| Sbjct 1021147 TCGGAGGCAGCAAAGAAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGG 1021206 Query 48599 GCATTCCAG 48607 || | |||| Sbjct 1021207 GCTTCCCAG 1021215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926854735431680