Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq18673 87.8 2e-12 seq25458 86.0 5e-12 seq23032 82.4 6e-11 >seq18673 Length=525508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || |||||| |||||||| || ||| | || || ||||||||||| || ||| Sbjct 460607 AAGAATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTTGAAAG 460548 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || ||| | | | | ||||| || || |||||||| || | || || Sbjct 460547 TTCTGACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGA 460488 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 || ||| || | || ||||| |||||||| | |||||| | ||| | || ||||| Sbjct 460487 CCAGCAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTA 460428 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||| || || ||||| |||||||| |||| || Sbjct 460427 TAACATCCAGAAGGAATCGACTCTGCATCTGGTCTT 460392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 466337 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAAAGTTCC 466278 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAG-AGGGAGTGCCCGTAGATC 28671 || ||| | | | || || ||||||| | || ||||||| ||| | | | | | || | Sbjct 466277 GACACGATAGACAATGTCAAAGCAAAGATTC-AGGACAAAGTAGGCATTCCTCCT-GACC 466220 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| |||||||| | |||||| | ||| | | |||||| Sbjct 466219 AACAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACGCTCGTGAATTATA 466160 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||| || || ||||| |||||||| |||| || Sbjct 466159 ACATCCAGAAGGAATCAACTCTGCATCTGGTCTT 466126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 503566 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAAAGTTCC 503507 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAG-AGGGAGTGCCCGTAGATC 28671 || ||| | | | || || ||||||| | || ||||||| ||| | | | | | || | Sbjct 503506 GACACGATAGACAATGTCAAAGCAAAGATTC-AGGACAAAGTAGGCATTCCTCCT-GACC 503449 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| |||||||| | |||||| | ||| | | |||||| Sbjct 503448 AACAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACGCTCGTGAATTATA 503389 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||| || || ||||| |||||||| |||| || Sbjct 503388 ACATCCAGAAGGAATCAACTCTGCATCTGGTCTT 503355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 460147 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTTGAAAGTTCT 460088 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| || || |||||||| || | || || || Sbjct 460087 GACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 460028 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | || ||||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 460027 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTATAAC 459968 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || ||||| |||||||| |||| || Sbjct 459967 ATCCAGAAGGAATCGACTCTGCATCTGGTCTT 459936 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || |||||| ||||| || |||||||| ||||| || | || Sbjct 460282 GACAAAGAAGGCATCCCACCAGATCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAG 460223 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || ||||||||||||||||| || || ||||| || |||| || Sbjct 460222 GATGGCAGGACTCTAGCTGATTATAACATTCAAAAGGAGTCGACTCTCCATCTGGTGTTG 460163 Query 28767 AGATTACGAGGAGGGAT 28783 ||| | |||| ||||| Sbjct 460162 AGACTCAGAGGCGGGAT 460146 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 498069 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTTGAAAGTTCT 498010 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| || || |||||||| || | || || || Sbjct 498009 GACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 497950 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | || ||||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 497949 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTATAAC 497890 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || ||||| |||||||| |||| || Sbjct 497889 ATCCAGAAGGAATCGACTCTGCATCTGGTCTT 497858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 498525 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTTGAAAGTTCT 498466 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| || || |||||||| || | || || || Sbjct 498465 GACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 498406 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | || ||||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 498405 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTATAAC 498346 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || ||||| |||||||| |||| || Sbjct 498345 ATCCAGAAGGAATCGACTCTGCATCTGGTCTT 498314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 498981 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTTGAAAGTTCT 498922 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| || || |||||||| || | || || || Sbjct 498921 GACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 498862 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | || ||||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 498861 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTATAAC 498802 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || ||||| |||||||| |||| || Sbjct 498801 ATCCAGAAGGAATCGACTCTGCATCTGGTCTT 498770 >seq25458 Length=394795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||| | || || ||||||||||| || ||| ||| Sbjct 385427 ATGCAGATATTTGTCAAGACACTGACTGGGAAAACCATTACATTAGAGGTCGAAAGTTCT 385486 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| || || |||||||| || | || || || Sbjct 385487 GACACGATAGACAACGTCAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAG 385546 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | || ||||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 385547 CAGCGATTGATATTTGCAGGCAAACAGCTCGAAGATGGCAGAACACTCGCGGATTATAAC 385606 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || || ||||| |||||||| |||| || Sbjct 385607 ATCCAGAAGGAATCAACTCTGCATCTGGTCTT 385638 >seq23032 Length=1100947 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || || || || ||||||||||| || |||| ||| Sbjct 134210 ATGCAAATATTTGTGAAGACTTTGACCGGAAAAACCATTACGTTGGAGGTGGAAAGCTCA 134269 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || ||||| ||||| | ||| ||| || Sbjct 134270 GACACAATAGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAG 134329 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | |||||||| || || || | |||||| | ||| | || || || ||| Sbjct 134330 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTCGCAGACTACAAC 134389 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||| || ||||| || Sbjct 134390 ATTCAGAAAGAGTCCACTCTTCA 134412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423321868144008