Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq24293 488 2e-133 seq32758 176 1e-39 seq27014 154 4e-33 seq5280 116 1e-21 seq28127 104 7e-18 seq28567 98.7 3e-16 seq16835 91.5 4e-14 seq32305 87.8 5e-13 >seq24293 Length=256785 Score = 488 bits (540), Expect = 2e-133 Identities = 684/957 (71%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || |||||||| || || || || |||||||| || || | |||||||| Sbjct 205434 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 205493 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| |||||||| || || || || | || | | | | | ||| Sbjct 205494 GCACGGTTAATAATATCAGCCCAAGTATTAATTACACGCCCTTGGCTATCAACTACTGAT 205553 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| |||| Sbjct 205554 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAAC 205613 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || ||||| || |||||||| ||||| || || || || | ||| || || || || Sbjct 205614 CAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGTTGAAA 205673 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || || ||||| ||||| Sbjct 205674 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 205733 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 205734 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 205793 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 205794 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 205853 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| || |||||||| || ||||||||||||||||| || Sbjct 205854 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 205913 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| | ||||| || || || || || | |||||| ||||||||||| || || Sbjct 205914 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 205973 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | || |||| | ||| || || || |||||||| |||||||| || || |||||| Sbjct 205974 CCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACA 206033 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||||||| | Sbjct 206034 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 206093 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | | || | |||||||||||||| | |||| Sbjct 206094 GCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATAACCAT 206153 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| |||||||| ||||| | || || || | | Sbjct 206154 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAGAAGTA 206213 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| ||||| || || ||||| || || | || || |||| || ||||| Sbjct 206214 GGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 206273 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||||| |||||||| || || Sbjct 206274 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 206333 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 |||| ||| ||| | || ||||| | || || |||||||| | |||||||| || Sbjct 206334 GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 206389 >seq32758 Length=53022 Score = 176 bits (194), Expect = 1e-39 Identities = 219/299 (73%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || ||||| || || ||||| | ||||||||| || |||||||| || |||||||||||| Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | ||| | ||||| || || || || || | |||||| ||||||||||| Sbjct 20760 TGGAATAC-ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || || | || |||| | ||| || || || |||||||| |||||||| || Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || |||||| ||||| || | ||| | || || | |||||||||||||| || ||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTT 22180 |||||| | || |||| | |||||| | || | | || | ||||||||||| Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq27014 Length=84001 Score = 154 bits (170), Expect = 4e-33 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 21886 ATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGA 21945 |||| || || ||||| | ||||||||| || |||||||| || |||||||||||||||| Sbjct 20152 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 20093 Query 21946 ACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGC 22005 | || | ||| | ||||| | || || || || | | |||| ||||||||||| Sbjct 20092 ATACAATCATAAAATTGAA--TACCAGAAATTCCTAGAGACATATCATCAGAAAAACTTG 20035 Query 22006 CCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACG 22065 | || || | ||||||| | ||| || || || |||||||| | ||||| || || | Sbjct 20034 CTTGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGGCAATAGGAGTTGAATATG 19975 Query 22066 CAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGT 22125 ||||| ||||| || | ||| || || || | |||||||||||||| || ||||||| Sbjct 19974 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 19915 Query 22126 AA 22127 || Sbjct 19914 AA 19913 >seq5280 Length=204759 Score = 116 bits (128), Expect = 1e-21 Identities = 185/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 |||||||||||||| | ||||||||||| | || |||||||| |||||||| ||||| Sbjct 154092 GGACCGCCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGC 154151 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | |||| | ||| ||||| || || || || || || | Sbjct 154152 AAACCAATAGCTGCATAAGTAGGAATAATGGCACCTGAGATAATATTTTTTCCGTAAAGT 154211 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || |||| || ||||| | ||| ||||| || || || || || || ||| ||| Sbjct 154212 AGAGATCCAGAAACAGGTTCAC-GATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 154270 Query 22350 GCGATAATAAA-ACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACC 22407 || |||||||| |||| || |||| ||| ||| | || ||||| | || || |||| Sbjct 154271 GCAATAATAAATACAA-AAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACC 154328 Query 22408 ATCCTACATAAAGACGGTT 22426 |||| | |||||||| || Sbjct 154329 ATCCAATGTAAAGACGATT 154347 Score = 93.3 bits (102), Expect = 1e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 21660 ACAACAGGCCAGGCAGC-AAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATA 21718 ||||||||||| | | | |||||| | | || ||| | || || || |||||||| Sbjct 175661 ACAACAGGCCAAGAATCTAAGAAAAATTTTAATTA-ACGAAAGTTGTTGAAACTAGCATA 175603 Query 21719 TTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTC 21778 |||||||| | || |||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 175602 TTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTC 175543 Query 21779 TTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGA 21838 ||||| || ||||||| | || | || | | || || || || | ||| | Sbjct 175542 TTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATGTGGTTTCCCTAATCAAACT 175483 Query 21839 CGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCAC 21898 || || || | | ||| ||||||| | ||| | || || || || || || || Sbjct 175482 AGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAACACACCAGCTAC 175423 Query 21899 ACCCAGCATGTGAAA 21913 ||| | ||||||||| Sbjct 175422 ACCTAACATGTGAAA 175408 >seq28127 Length=41111 Score = 104 bits (114), Expect = 7e-18 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043 |||||| ||||||||||| || || || | || |||| | ||| || || || ||| Sbjct 29688 GGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCA 29629 Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103 ||||| |||||||| || || |||||| ||||| || | ||| | || || | ||| Sbjct 29628 GCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTA 29569 Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 ||||||||||| || ||||||||| | || |||| | |||||| | || | | | Sbjct 29568 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAAT 29509 Query 22164 TGGAATGGACCGCCGTT 22180 | | ||||||||||| Sbjct 29508 TCATAAGGACCGCCGTT 29492 >seq28567 Length=163623 Score = 98.7 bits (108), Expect = 3e-16 Identities = 143/200 (72%), Gaps = 14/200 (7%) Strand=Plus/Plus Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533 || || || |||||||| || || || || |||||||| || || | |||| |||| ||| Sbjct 83976 AGATCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATGGTTAGCA 84035 Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGAT----CACC--TGTCCATCAGCAGCTAGCAGA 21587 | ||||| || ||| |||| | || || |||| || | |||| | || Sbjct 84036 CAGTTAA--ATATCATCCCAAGAATTAATTACACACCCTTGGCTATCAACTACT------ 84087 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| || ||||||||||| | |||||||||||| || | || | |||| | Sbjct 84088 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTA 84147 Query 21648 AACCAAATACCTACAACAGG 21667 ||||||||||| || ||||| Sbjct 84148 AACCAAATACCCACTACAGG 84167 >seq16835 Length=343710 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21987 ATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCG 22046 ||| ||||||||||| | || || | || |||| | ||| || || || |||||| Sbjct 191685 ATACCATCAGAAAAACTTCTTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCG 191744 Query 22047 GCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGT 22106 || |||||||| || || ||||||| ||||| || | ||| || || || | |||||| Sbjct 191745 GCAACAGGAGCTGAATATGCAACAACAATCCAAGGTCGCATACCCAGACGGAAACTAAGT 191804 Query 22107 TCCCACTCTCGTCCCATGTA 22126 | |||||| || |||||||| Sbjct 191805 TTCCACTCACGACCCATGTA 191824 >seq32305 Length=14517 Score = 87.8 bits (96), Expect = 5e-13 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 |||||| ||||||| | ||||||||||| | | |||||||| ||||| || ||||| Sbjct 12494 GGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATAAAAGTGC 12553 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | |||| | ||| ||||| || || ||||| || || | Sbjct 12554 AAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGT 12613 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || |||| || ||||| || || ||||| || || || || | || ||| ||| Sbjct 12614 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAATGAAG 12673 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 | |||||||| || || |||| ||| ||| | || ||||| | || || ||||| Sbjct 12674 GAAATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCA 12732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145510470142560