Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq24293 527 7e-145 seq1880 212 7e-50 seq32758 158 1e-33 seq5280 145 9e-30 seq27014 136 5e-27 seq32305 118 1e-21 seq28127 93.3 5e-14 >seq24293 Length=256785 Score = 527 bits (584), Expect = 7e-145 Identities = 715/989 (72%), Gaps = 12/989 (1%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 205434 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 205493 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCG---TTAGC-ATCAACAAC 124164 || | ||| | || |||| |||| || | | || || || || |||||| || Sbjct 205494 GCACGGTTAATAATATCAGCCCAAGT----ATTAATTACACGCCCTTGGCTATCAACTAC 205549 Query 124165 TGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGT 124224 ||||||||| || ||||||||||| | |||||| ||||| |||| ||||| | || || Sbjct 205550 TGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 205609 Query 124225 TAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTT 124284 ||||| | || || ||||| || | |||||||| ||||| | | |||||||| Sbjct 205610 AAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGTT 205669 Query 124285 GAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTA 124344 ||| |||||| |||||||| | || ||||| ||||| || || ||||| || || || Sbjct 205670 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 205729 Query 124345 TGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTC 124404 |||||||| ||||| ||||| | ||||| | || || || | ||||| ||||| Sbjct 205730 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 205789 Query 124405 TCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAA 124464 ||||| | | ||| || || | ||||||||||| || ||||| || || ||||| Sbjct 205790 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 205849 Query 124465 CATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAA 124524 | || ||||| ||| |||||| || || ||||| || ||||| ||||| || ||||| Sbjct 205850 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 205909 Query 124525 AACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACC 124584 || | |||||| ||||||||||| || || || || |||||||||||||| || || Sbjct 205910 TACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 205969 Query 124585 CTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGC 124644 ||||| | |||||| | ||||| || ||| ||||| | || || |||||||| || Sbjct 205970 TTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGC 206029 Query 124645 AACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 |||| |||||||| ||||| || | | | | |||||||||| | |||||||| Sbjct 206030 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 206089 Query 124705 TGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAA 124764 | | ||||| | |||||| | || || || | ||||||||| || || || || Sbjct 206090 ACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATAA 206149 Query 124765 CCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGA 124824 |||||||||||| | ||||||||||||||||||||| ||||| | || ||||| || Sbjct 206150 CCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAGA 206209 Query 124825 TGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGG 124884 | |||| || ||||| ||||| || ||||| || || | | ||| || | || || Sbjct 206210 AGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 206269 Query 124885 TTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATG 124943 ||| | || || || ||||| || ||||| || ||||| || |||| || || ||| | Sbjct 206270 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-G 206328 Query 124944 CTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGT 125003 | ||| || | |||| || ||||| | |||||||||||| |||| |||| | | Sbjct 206329 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGAC-GA 206387 Query 125004 TGTTTGTTGAT-GTTACCCACTCACAGAA 125031 | || | || | |||| ||| | |||||| Sbjct 206388 TTTTCGGTGCTGGTTATCCAGTTACAGAA 206416 >seq1880 Length=405587 Score = 212 bits (234), Expect = 7e-50 Identities = 414/612 (68%), Gaps = 21/612 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 130087 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 130146 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 130147 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAA 130206 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || ||||| || ||||| || || | Sbjct 130207 AGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCATAGGCACG 130266 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || | ||| || | || | || |||| | ||| | || || || Sbjct 130267 TAGGTTCAGAGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 130326 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 130327 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 130386 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 130387 CCAAAAGCGGTTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 130446 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| ||| ||| | |||||| | || || Sbjct 130447 ACGGAA---TGTA-TTTG-----CACCATCACCA------------TCTTCAAATAAAGT 130485 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || |||| || || | || | || || ||||| Sbjct 130486 ATTTTCTACGGTAGCACCATGAATAGCGCATAACAAAGCAGCGCCCAATACACCGGCAAC 130545 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| ||| || || || ||||| | || | || | Sbjct 130546 TCCCATCATATGAAATGGGTTCAGTGTCCAATTATGAAATCCTTGAAAAAAGAGTATGAA 130605 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| |||| || ||||| |||||||||| ||| |||||||| Sbjct 130606 TCGAAATATAGCTGCTACACTAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGG 130665 Query 123466 ATAGATCAGAAA 123477 ||| ||||| || Sbjct 130666 ATAAATCAGGAA 130677 >seq32758 Length=53022 Score = 158 bits (174), Expect = 1e-33 Identities = 215/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || ||||| ||| |||||| || || ||||| || ||||| ||||| || Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| || | |||||| ||||||||||| || || || || |||||||||||||| || Sbjct 20760 TGGAATAC-ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||| | |||||| | ||||| || ||| ||||| | || || |||||| Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| |||||||| ||||| | | | | | |||||||||| | ||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATT 124758 ||||| | | ||||| | |||||| | || || || | ||||||||| || || Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq5280 Length=204759 Score = 145 bits (160), Expect = 9e-30 Identities = 228/320 (71%), Gaps = 5/320 (2%) Strand=Plus/Plus Query 124714 ACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATC 124773 ||||| | |||||| | || || | | ||||||||| || || || ||||||||||| Sbjct 154058 ACCAAGTAAGAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCATC 154117 Query 124774 AACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAAC 124833 ||| | ||||||||||||||||||||| ||||| | || ||||| | | |||| Sbjct 154118 AACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCATAAGTAGGAAT 154177 Query 124834 AACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGAT 124893 || ||||| ||||| || || || || || | | ||| || | || ||||| | ||| Sbjct 154178 AATGGCACCTGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCAC-GAT 154236 Query 124894 TCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTG 124952 || || ||||| || ||||| || ||||| || |||| || || ||| | ||| | Sbjct 154237 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-AAAGTTGCGG 154295 Query 124953 TGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTTTGTTG 125012 | | |||| || ||||| | |||||||||||| |||| |||| | | | || | || Sbjct 154296 TCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGAC-GATTTTCGGTG 154354 Query 125013 AT-GTTACCCACTCACAGAA 125031 | |||| ||| | |||||| Sbjct 154355 CTGGTTATCCAGTTACAGAA 154374 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 124278 AGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTA 124337 |||||||||| |||||| ||||||| | || ||||| ||||| || || ||||| | Sbjct 175621 AGTTGTTGAAACTAGCATATTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGA 175562 Query 124338 TGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTG 124397 | || || |||||||| ||||| | ||| | ||||| | || | || || | | || Sbjct 175561 TATTATAAGTTTCTTCCTCTTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATG 175502 Query 124398 TTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATC 124457 | ||||| || || | | ||| || |||| ||||||||||| | ||||| || | Sbjct 175501 TGGTTTCCCTAATCAAACTAGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGC 175442 Query 124458 CTCCGAACATTCCTGCTACTCCTGCCATGTGGAA 124491 | ||||||| || ||||| ||| |||||| || Sbjct 175441 CGCCGAACACACCAGCTACACCTAACATGTGAAA 175408 >seq27014 Length=84001 Score = 136 bits (150), Expect = 5e-27 Identities = 249/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 124346 GTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 |||||||| ||||| || || | ||||| | || || || | ||| | ||||| Sbjct 20268 GTTTCTTCCTCTTGACCTAATCTGTAACCTTCATTAGCAGATTCATTTTCTTTGGTTTCC 20209 Query 124406 CTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGA-A 124464 ||||| | | ||| | || | ||||||||||| || | ||| || || |||| | Sbjct 20208 CTGATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTG-ATAGGGAGCCGCCGATA 20150 Query 124465 CATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAA 124524 || || ||||| ||| |||||| || || ||||| || ||||| ||||| || ||||| Sbjct 20149 CA--CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 20092 Query 124525 AACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACC 124584 || | |||||| ||||| |||| || || || || | |||| ||||||| || | Sbjct 20091 TACAATCATAAAATTGAA--TACCAGAAATTCCTAGAGACATATCATCAGAAAAACTTGC 20034 Query 124585 CTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGC 124644 ||||| | ||| || | ||||| || ||| ||||| | | || | |||||| || Sbjct 20033 TTGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGGCAATAGGAGTTGAATATGC 19974 Query 124645 AACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 |||| |||||||| ||||| || | | | | |||||||||| | |||||||| Sbjct 19973 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 19914 >seq32305 Length=14517 Score = 118 bits (130), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 124744 ATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAA 124803 ||||||||| | || || |||||||||||||| | || ||||||||||||||| || || Sbjct 12490 ATAAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATAAAA 12549 Query 124804 GTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATA 124863 ||| | || ||||| || | |||| || ||||| ||||| || ||||| || || Sbjct 12550 GTGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTA 12609 Query 124864 TAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAAT 124923 | | ||| || | || ||||| | || || || ||||| || |||| || |||| Sbjct 12610 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAAT 12669 Query 124924 AAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAA 124982 || | || || || ||| | | ||| || | |||| || ||||| | |||||||| Sbjct 12670 GAAGGAAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAA 12728 Query 124983 ACCA 124986 |||| Sbjct 12729 ACCA 12732 >seq28127 Length=41111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 124545 TACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTA 124604 |||| || || || || |||||||||||||| || || ||||| | |||||| | | Sbjct 29705 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCA 29646 Query 124605 AGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCA 124664 |||| || ||| ||||| | || || |||||||| |||||| |||||||| |||| Sbjct 29645 AGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 29586 Query 124665 TTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGA 124724 | | | | | | |||||||||| | |||||||| | | ||||| | || Sbjct 29585 TATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 29526 Query 124725 AGTGGAAAATTACCAACTGATAAGGACCACCATT 124758 |||| | || || || | ||||||||| || || Sbjct 29525 AGTGTAGAACTATTAATTCATAAGGACCGCCGTT 29492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576090727935040