Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq24293 574 6e-159 seq1880 325 5e-84 seq32758 185 1e-41 seq27014 172 7e-38 seq5280 154 2e-32 seq32305 136 5e-27 seq28127 102 1e-16 seq21905 96.9 5e-15 >seq24293 Length=256785 Score = 574 bits (636), Expect = 6e-159 Identities = 724/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| ||||| | || || ||||| || || | ||| || || || || | ||||| Sbjct 205430 AGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 205489 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 ||||||||| | || || |||||||| || | ||||| || || ||||| || Sbjct 205490 GTTAGCACGGTTAATAATATCAGCCCAAGTATTAATTACACGCCCTTGGCTATCAACTAC 205549 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 || || ||||| |||||||| || || ||||||||||| ||| | ||| | || || Sbjct 205550 TGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 205609 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||||| || || || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 205610 AAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGTT 205669 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| |||||||||||||||||| || || || || ||||| || || ||||| || || Sbjct 205670 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 205729 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||||||||| | ||||| | || || ||| |||| || || || Sbjct 205730 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 205789 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 205790 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 205849 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || |||||||||||||| ||||| || |||||||| Sbjct 205850 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 205909 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| | || ||||||||||| || || ||||||||| |||| || ||| || Sbjct 205910 TACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 205969 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | || || | | ||| ||||| | ||||| || || ||||| |||||||| Sbjct 205970 TTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGC 206029 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| || |||||||| | ||| | |||||||||||||| ||||| || Sbjct 206030 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 206089 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | |||| | || ||||||| ||||| || || Sbjct 206090 ACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATAA 206149 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||| ||||| | ||||||||||||||||||||||| ||||| | ||| || || || Sbjct 206150 CCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAGA 206209 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || ||||| || || || ||||| || || | || || |||| ||| || Sbjct 206210 AGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 206269 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 |||||||||||| |||||||| || || || || || ||||| || | ||| || |||| Sbjct 206270 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 206329 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| ||||| |||| || | ||| | Sbjct 206330 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGAT 206388 Query 27689 TGTTAGTTGAT-GTCACCCACTCACAGAA 27716 | || | || | || | ||| | |||||| Sbjct 206389 T-TTCGGTGCTGGTTATCCAGTTACAGAA 206416 >seq1880 Length=405587 Score = 325 bits (360), Expect = 5e-84 Identities = 444/620 (72%), Gaps = 0/620 (0%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | |||||| | || |||||| || || | Sbjct 130086 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 130145 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 130146 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 130205 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || || ||||| || ||| || || ||||| |||| Sbjct 130206 AAGTCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCATAGGCAC 130265 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || ||||| | || | | |||| || | | ||| | ||| | || || | Sbjct 130266 GTAGGTTCAGAGCCAAACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 130325 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 130326 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 130385 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 130386 ACCAAAAGCGGTTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 130445 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||||||| | | ||||| || || ||| | |||| Sbjct 130446 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCAT 130505 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | | | || | |||| || ||| ||||||||||||||||| || |||| Sbjct 130506 GAATAGCGCATAACAAAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 130565 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | || ||||| |||||||| || || | ||||| | ||| | || || || || |||| Sbjct 130566 TCAGTGTCCAATTATGAAATCCTTGAAAAAAGAGTATGAATCGAAATATAGCTGCTACAC 130625 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 ||||| || |||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 130626 TAAAACTAGGTGCAAAGAACCAACCAGACTGCCCTAGTGGATAAATCAGGAATACAGAAA 130685 Query 23986 CGAATACAGCAATAGGACCA 24005 | || |||||||| |||||| Sbjct 130686 CAAAAACAGCAATTGGACCA 130705 >seq32758 Length=53022 Score = 185 bits (204), Expect = 1e-41 Identities = 221/299 (74%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| ||||| | |||||| || |||||||||||||| ||||| || ||| Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 ||||||||| ||| | || ||||||||||| || || ||||||||| |||| || ||| Sbjct 20760 TGGAATACAT-CATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||| | || || | | ||| ||||| | ||||| || || ||||| ||| Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 ||||| ||| ||||| || |||||| | | ||| | |||||||||||||| ||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 || ||| | | || | | |||||| | |||| | || ||||||| ||||| Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq27014 Length=84001 Score = 172 bits (190), Expect = 7e-38 Identities = 204/273 (75%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || ||||||||| || | | || || |||| ||| ||||| ||||| | |||||| || Sbjct 20181 CCATGCATAGCACTGATAGG-GAGCCGCCGA-TACACCAGCTACACCTAACATGTGAAAT 20124 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 |||||||||||||| ||||| || ||||||||||||| ||| | || || ||||||| Sbjct 20123 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAATTGAA--TACCAGAA 20066 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 || || |||| |||| |||| || ||| ||||||| | ||||| | | ||| ||| Sbjct 20065 ATTCCTAGAGACATATCATCAGAAAAACTTGCTTGACCTATTGGATAAATCAAGAAAACT 20006 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAA 27357 || | ||||| || | |||| |||||||| ||| ||||| || |||||||| | | Sbjct 20005 GCGGTAGCAGCGGCAATAGGAGTTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGA 19946 Query 27358 CGATATGAGAGTTCCCACTCACGTCCCATATAA 27390 || | |||||||||||||| ||||| ||| Sbjct 19945 CGGAAACTAAGTTCCCACTCACGACCCATGTAA 19913 >seq5280 Length=204759 Score = 154 bits (170), Expect = 2e-32 Identities = 225/313 (72%), Gaps = 9/313 (3%) Strand=Plus/Plus Query 27408 GAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGC 27467 |||||| | |||| | || ||||||| ||||| || ||||| ||||| | ||||| Sbjct 154067 GAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGC 154126 Query 27468 TGCTTCCCAGATTGGGTAGAAGTGGAGACCGAT---TGCATTTGAACTTGGGACAACTGC 27524 |||||||||||||||||| ||||| | ||| || ||||| || | || | || || Sbjct 154127 TGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAT---AAGTAGGAATAATGGC 154183 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 ||| || || || || || || || | || || |||| ||| |||||||| ||||| || Sbjct 154184 ACCTGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACG-ATACCATC 154242 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAACAG 27644 |||||| || || || || || ||||| || | ||| || | |||||| | || | Sbjct 154243 AATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCGGTCAATAA 154302 Query 27645 TGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGAT-GTCA 27703 || |||||||||| ||||| ||||| |||| || | ||| || || | || | || | Sbjct 154303 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATT-TTCGGTGCTGGTTA 154361 Query 27704 CCCACTCACAGAA 27716 ||| | |||||| Sbjct 154362 TCCAGTTACAGAA 154374 Score = 109 bits (120), Expect = 7e-19 Identities = 177/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 26922 AACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATA 26981 |||||| ||||| | | | | ||| || | || |||| |||||||||| |||||| Sbjct 175662 AACAACAGGCCAAGAATCTAAGAAAAATTTTAATTAACGAAAGTTGTTGAAACTAGCATA 175603 Query 26982 TTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTC 27041 |||||||| ||| || || || || ||||| || || ||||| || || || ||||| || Sbjct 175602 TTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTC 175543 Query 27042 TTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGA 27101 ||||| ||| | ||||| | || | || ||| ||| || || || | | | Sbjct 175542 TTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATGTGGTTTCCCTAATCAAACT 175483 Query 27102 AGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAAC 27161 ||| || || | || ||||||| | ||| || || || ||||| || ||||| || Sbjct 175482 AGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGCCGCCGAACACACCAGCTAC 175423 Query 27162 ACCGAGCATGTGGAA 27176 ||| | |||||| || Sbjct 175422 ACCTAACATGTGAAA 175408 >seq32305 Length=14517 Score = 136 bits (150), Expect = 5e-27 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 ||||||| |||| || ||||| ||||| | |||| ||||||||||||||| || |||| Sbjct 12492 AAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATAAAAGT 12551 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | | ||| || || ||| | || | || ||||| || || || ||||| || || | Sbjct 12552 GCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAA 12611 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 || || |||| ||| |||||||||||||| |||||||| || || | || | |||| Sbjct 12612 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAATGA 12671 Query 27611 ATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAAC 27669 | | | ||| || |||| |||||| | || | || |||||||||| ||||| ||| Sbjct 12672 AGGAAATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 12730 Query 27670 CA 27671 || Sbjct 12731 CA 12732 >seq28127 Length=41111 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27230 TACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGA 27289 ||||||| || || ||||||||| |||| || ||| |||||||| | || || | | Sbjct 29705 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCA 29646 Query 27290 GGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCA 27349 ||| ||||| | ||||| || || ||||| |||||||| ||| ||||| || |||| Sbjct 29645 AGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 29586 Query 27350 TACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGA 27409 || | | ||| | |||||||||||||| ||||| ||| | | || | | || Sbjct 29585 TATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 29526 Query 27410 AGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 |||| | |||| | || ||||||| ||||| Sbjct 29525 AGTGTAGAACTATTAATTCATAAGGACCGCCGTT 29492 >seq21905 Length=358179 Score = 96.9 bits (106), Expect = 5e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 32608 TCAGTAGAGTTT-CTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAA 32666 ||| ||||| | |||| ||||| ||| | ||| | | ||| ||||| ||||| || | Sbjct 14414 TCAATAGAGGTCACTCTCCTTGTG-AGTGTGAATCACACAATCGGAAGTAGGATACGCGA 14356 Query 32667 CACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTT 32726 |||| || ||||| | || | || |||||||||||||| | ||||| ||| | Sbjct 14355 CACAGGTCAGCACGTAGCCCTGCTCCATTTGATCATCATCAAGAAACGAGCCATCCGACT 14296 Query 32727 GGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAG 32786 |||| || | |||||| || | |||||||| || | || || ||||| || | |||| Sbjct 14295 GGTCAACAGAACCAGACACCCTTTTACCTGCGCAGGTAGAGCATGCACCAGCCCTGCAAG 14236 Query 32787 AGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 |||| | ||||| || | |||||| | |||||||| ||| ||| |||| Sbjct 14235 AGTATGGAAGATCAATTCCGGCAGACTCTGCAGTGTCAAGGATATATGCATCGTCAG 14179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662152353672640