Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq938 147 3e-30 seq11877 120 4e-22 seq29893 91.5 2e-13 seq33802 89.7 6e-13 >seq938 Length=1173706 Score = 147 bits (162), Expect = 3e-30 Identities = 374/564 (66%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 64657 TTCCCCCTGAAGTATCCACAACTCTGGGAACTCTATAAAAAGGCTCAAATGAGCAATTGG 64716 |||||| | |||| || || | |||||| | || || ||||| || | |||| Sbjct 1021313 TTCCCCATTGAGTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCTTCCTTTTGG 1021254 Query 64717 ACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAAAAT 64776 || || || || || |||||||| | || || | | ||||| | |||| | || || Sbjct 1021253 ACAGCCGAGGAGGTAGATTTGTCGCAGGACCTCGCCCACTGGGAAGCCCTCACTGCCGAT 1021194 Query 64777 GAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTT 64836 || ||| | ||||| || | | ||||| |||||||||| |||||||| || ||||| Sbjct 1021193 GAGAAGCATTTCATCAAACATGTTCTGGCCTTCTTTGCTGCCTCCGATGGCATCGTTTTG 1021134 Query 64837 GAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTAC 64896 |||||| | | || || | | ||||| ||| | ||| |||||| | || ||| Sbjct 1021133 GAGAATCTAGCTGGCAGGTTCATGAAAGAAGTCCAGGTTTCCGAGGCGCGCGCGTTTTAC 1021074 Query 64897 GCATATCA-ATGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATT--GATTGAC 64953 | || || || || | || | | || ||| | || || || | | || Sbjct 1021073 GGATTCCAGATTGCA-ATCGAGAACATCCACTCCGAGATGTA--CAGTCTTCTGCTCGAA 1021017 Query 64954 AAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCA 65013 | |||||| || ||| | || |||| | | || ||| || | || || ||| Sbjct 1021016 ACATACATCAAAGATTCGGCCGAGAAGAGTCGCCTCTTCCGAGCTATTGACACAGTCCCA 1020957 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTC 65073 || | ||||||||||| || ||||| | ||| | ||| | || || || Sbjct 1020956 TGCGTGGAGAAGAAGGCCAAGTGGGCCCTACGTTGGATCGACGGA---TCCGAATCTTTT 1020900 Query 65074 GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC 65133 |||||||| || | || ||||| || || ||||| || |||||||||||| |||||| Sbjct 1020899 GCCGAGCGGCTACTCGCCTTTGCTTGCGTTGAGGGGATATTCTTCTCCGGGAGCTTCTGC 1020840 Query 65134 GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTT 65193 || || | |||||||||||| || || ||||||||||| || || || || || || Sbjct 1020839 GCCATATTTTGGTTGAAGAAACGCGGCCTCATGCCAGGATTAACTTTTTCCAACGAGCTA 1020780 Query 65194 ATTTCCCGAGATGAGGGTCTCCAC 65217 || || |||| |||||||| ||| Sbjct 1020779 ATCTCGAGAGACGAGGGTCTGCAC 1020756 >seq11877 Length=307084 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||||||| | || ||| ||||| || |||||| | ||| ||||| Sbjct 285437 CCTGGTACTGGAAAGACCTTGCTGGCCAAGGCCATTGCTGGTGAAGCGGGTGTGCCATTT 285496 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | | | ||||| ||||||||||||||||| || ||| | | | Sbjct 285497 TTCTCCATT--TCAGGTTCCGAATTTGTTGAGATGTTTGTTGGTGTTGGAGCCTCACGAG 285554 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||||| || || | | ||| |||||| ||||| || || || ||||||| | Sbjct 285555 TCCGCGACCTTTTCAAGAAGGCCAAGGAAAATGCCCCATGCATAGTATTTGTTGATGAAA 285614 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| || || ||| | | ||||| | || |||||| || || || | Sbjct 285615 TTGATGCTGTTGGGCGTCAAAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGGGAGC 285674 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 | ||| | || || ||| | || || |||||||| ||||| | ||||| || | | Sbjct 285675 AGACACTGAACCAGCTATTAACAGAAATGGATGGTTTTGAAGGGAATACTGGTATAATTG 285734 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || |||||||| | ||||| ||||| Sbjct 285735 TAATTGCAGCAACTAATCGTGCAGATATTCTTGA 285768 >seq29893 Length=995234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| || || || |||| |||| | | ||| || ||||| ||||| ||||| Sbjct 40861 GGTGCAAAAATACCTAAAGGCTGCCTTTTGGTCGGTCCACCGGGTACAGGAAAAACCCTT 40802 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | ||| |||| | | ||||| | || || ||| || || |||| || | Sbjct 40801 TTGGCCAGAGCAGTGTCTGGTGAGGCCGGCGTTCCGTTCTTCTCATGTGCTGCTTCAGAA 40742 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| ||||||| ||||| || || ||| || | ||| | || || | || Sbjct 40741 TTTGTGGAGCTGTTTGTAGGTGTTGGAGCTTCAAGAGTCAGGGATTTATTCGAGAAAGCA 40682 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 ||| ||| || ||||| |||||||||||||||||||| || || | ||| | Sbjct 40681 AAGTCAAAGGCACCTTGCATTGTTTTCATTGATGAGATTGATGCCGTTGGAAGGCAGAGA 40622 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || |||| || | ||||| ||||| || || || |||||||| ||| | Sbjct 40621 GGGGCAGGGCTTGGT-GGC--GGGAATGATGAGAGGGAGCAGACTATTAATCAGCTATTG 40565 Query 175573 ACCGAGATGGATGGCTT 175589 || || ||||| || || Sbjct 40564 ACTGAAATGGACGGATT 40548 >seq33802 Length=298597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 295/453 (65%), Gaps = 18/453 (4%) Strand=Plus/Minus Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGC 175340 |||||| || || |||| || | | ||| ||| || || || |||||||| || || Sbjct 23713 CAAGATTCCGCGCGGCGTGCTGATGGTGGGGCCGCCCGGCACCGGCAAGACCCTGCTGGC 23654 Query 175341 CCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGT 175400 | |||||||| || || | || || || ||| || | ||| | | |||| || Sbjct 23653 CAAGGCCATCGCCGGCGAGGCCAAGGTGCCGTTCTTCTCGATCTCCGGTTCGGACTTCGT 23594 Query 175401 GGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA 175460 ||||||||| || || ||||| |||| | || ||||| | || || || || | Sbjct 23593 GGAGATGTTCGTGGGCGTGGGCGCCAGCCGCGTGCGCGACATGTTCGA----GCAGGCCA 23538 Query 175461 A-AATCA---ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCA 175516 | || || || || || ||||||| || ||||| || ||||||||| || ||| Sbjct 23537 AGAAGCATGCGCCGTGCATCATCTTCATCGACGAGATCGACGCGGTGGGCCGCCACCGCG 23478 Query 175517 GCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 |||| || ||| || || | |||||| | || || || | || || | || Sbjct 23477 GCGCCGGCTTGGGCGGCGGGC--ACGACGAGCGCGAGCAGACGCTGAACCAGTTGCTGGT 23420 Query 175575 CGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCG 175631 |||||||| ||||| || || || ||||| | || ||||| ||||| || || Sbjct 23419 GGAGATGGACGGCTTCGAGGGCAGCGA---AGGCATCATCGTGATTGCCGCCACCAACCG 23363 Query 175632 CGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATCCAAGT 175691 | || | || ||| ||| || || || || || ||||| || ||| || | || Sbjct 23362 CCCCGACGTGCTCGATCCCGCACTGCTCCGGCCCGGCCGTTTCGACCGCCAGGTGGTGGT 23303 Query 175692 GGGTCTTCCAAGTGTGCGAGGTCGCAAGAAGAT 175724 ||| || || ||| ||| ||| || |||| Sbjct 23302 GGGCCTGCCCGACGTGAAAGGCCGCGAGCAGAT 23270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593573687125760