Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq24293 520 1e-142 seq27014 170 2e-37 seq32758 158 1e-33 seq32305 127 3e-24 seq5280 127 3e-24 seq28567 116 5e-21 seq28127 98.7 1e-15 seq1151 93.3 5e-14 >seq24293 Length=256785 Score = 520 bits (576), Expect = 1e-142 Identities = 690/953 (72%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 205434 GCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 205493 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| ||| ||| | || | |||||| |||| Sbjct 205494 GCACGGTTAATAATA--TCAGCCCAAGTATTAATTACACGCCCTTGGCTATCAACTACTG 205551 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || ||||| || ||||| |||| |||||| | || ||| | Sbjct 205552 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAA 205611 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-A 8127 |||| | || || || || | | ||| ||||| ||||| | | | |||||| | Sbjct 205612 ACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGTTGA 205671 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| Sbjct 205672 AACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 205730 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| |||||||| || | ||||| | || ||| || | ||| || || || Sbjct 205731 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 205790 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || || ||||| Sbjct 205791 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 205850 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||| Sbjct 205851 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 205910 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| || || || ||||||||||| ||||||||||| |||||||| || || Sbjct 205911 ACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 205970 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||| | ||| || | ||||| |||||| |||||| | || ||||| |||||| Sbjct 205971 TGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCA 206030 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| ||||| |||| |||||| | ||| | | ||||||| | |||||||||| Sbjct 206031 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 206090 Query 8548 GCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607 || | |||| | |||||| | | | || | ||| ||||| ||||| || ||| Sbjct 206091 CAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATAAC 206150 Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667 || ||||| | | || |||||||| || || || ||||| || |||||||| ||| Sbjct 206151 CATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAGAA 206210 Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727 | |||| | ||||| ||||| || |||||||| || | | || || | ||||||| Sbjct 206211 GTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGT 206270 Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787 ||||||||||| || ||||| || || ||||||||||| || || | ||||| || | Sbjct 206271 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAA 206330 Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 | || | || ||| ||| ||||| | ||| |||||||| || | ||||| Sbjct 206331 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 206383 >seq27014 Length=84001 Score = 170 bits (188), Expect = 2e-37 Identities = 256/360 (71%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| |||||||| || | ||||| | || ||| || | ||| | || || Sbjct 20268 GTTTCTTCCTCTTGACCTAATCTGTAACCTTCATTAGCAGATTCATTTTCTTTGGTTTCC 20209 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| | || || ||||| |||||||||||| | || || || ||| | Sbjct 20208 CTGATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTG-ATAGGGAGCCGCCG-AT 20151 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||| Sbjct 20150 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 20091 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| || || || |||||||||| ||||||| ||| ||||||| || | Sbjct 20090 ACAATCATAAAATTGAA--TACCAGAAATTCCTAGAGACATATCATCAGAAAAACTTGCT 20033 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||| | |||||| | ||||| |||||| |||||| | | |||| |||||| Sbjct 20032 TGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGGCAATAGGAGTTGAATATGCA 19973 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| ||||| |||| |||||| | ||| | | ||||||| | |||||||||| Sbjct 19972 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 19913 >seq32758 Length=53022 Score = 158 bits (174), Expect = 1e-33 Identities = 215/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||| | ||| || || || ||||||||||| ||||||||||| |||||||| || Sbjct 20760 TGGAATAC-ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 || ||||| | ||| || | ||||| |||||| |||||| | || ||||| | Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||| ||| ||||| |||| |||| | | ||| | | ||||||| | |||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 8542 ATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||||| || | |||| | |||||| | | | || | ||| ||||| ||||| Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq32305 Length=14517 Score = 127 bits (140), Expect = 3e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| |||| || ||||| ||||| | | | |||||||| || ||||| || Sbjct 12490 ATAAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATAAAA 12549 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||| || |||||||| |||| |||| | ||||| ||||| || |||||||| || Sbjct 12550 GTGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTA 12609 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | | || || | |||||||||||||||||| || ||||| || || | |||| |||| Sbjct 12610 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAAT 12669 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || | | ||||| || || || | || ||| ||| ||||| | ||| ||||| Sbjct 12670 GAAGGAAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAA 12729 Query 8826 CCA 8828 ||| Sbjct 12730 CCA 12732 >seq5280 Length=204759 Score = 127 bits (140), Expect = 3e-24 Identities = 182/255 (71%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 8586 ATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAA 8645 ||| ||||| ||||| || ||||| ||||| | | || |||||||| || || || || Sbjct 154088 ATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAA 154147 Query 8646 GTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||| || |||||||| ||| |||| | ||||| ||||| || || ||||| || Sbjct 154148 GTGCAAACCAATAGCTGCATAAGTAGGAATAATGGCACCTGAGATAATATTTTTTCCGTA 154207 Query 8706 CATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAAT 8765 | | || || | |||||||||||| ||||| || ||||| || || ||||||||||| Sbjct 154208 AAGTAGAGATCCAGAAACAGGTTCACG-ATACCATCAATATCTACTGGAGGAGCAGCAAT 154266 Query 8766 AAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAA 8825 || || | ||||| | || || | || ||| ||| ||||| | ||| ||||| Sbjct 154267 GAAGGCAATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAA 154326 Query 8826 CCAACCGACATAAAG 8840 ||| || | ||||| Sbjct 154327 CCATCCAATGTAAAG 154341 >seq28567 Length=163623 Score = 116 bits (128), Expect = 5e-21 Identities = 137/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 7897 TCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTG 7956 |||| |||||||| || ||||||| |||||||||||||||||| || ||| || | | Sbjct 83979 TCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATGGTTAGCACAG 84038 Query 7957 TTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGATTGGTT 8015 || |||| ||| |||| | | ||| | ||| || | |||||| ||||||||||| Sbjct 84039 TTAAATA--TCATCCCAAGAATTAATTACAC-ACCCTTGGCTATCAACTACTGATTGGTT 84095 Query 8016 AAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAAC 8075 || || || || || ||||| || ||||| |||| |||||| | || ||| ||||||| Sbjct 84096 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAAT 84155 Query 8076 AC 8077 || Sbjct 84156 AC 84157 >seq28127 Length=41111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8387 TACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTA 8446 |||||||||| ||||||||||| |||||||| || || ||||| | ||| || | | Sbjct 29705 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCA 29646 Query 8447 AGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCA 8506 |||| |||||| |||||| | || ||||| |||||| ||| ||||| |||| || Sbjct 29645 AGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 29586 Query 8507 TACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGA 8566 || | | ||| | | ||||||| | |||||||||| || | |||| | || Sbjct 29585 TATCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 29526 Query 8567 AGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||| | | | || | ||| ||||| ||||| Sbjct 29525 AGTGTAGAACTATTAATTCATAAGGACCGCCGTT 29492 >seq1151 Length=20901 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 ||||| ||||| || |||||||| || | | || || | |||||||||| ||||||| Sbjct 11423 GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCATGAATACCA 11364 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || ||||| || || ||||||||||| || || | ||||| || || | | || Sbjct 11363 TCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTTCGGTCAAT 11304 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 ||| ||| ||||| | ||| |||||||| || | ||||| Sbjct 11303 AAGGCAGGGATCATAAAAACACCAAACCATCCAAAGTAAAG 11263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612769600613440