Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq24293 484 2e-132 seq32758 149 2e-31 seq5280 149 2e-31 seq27014 125 2e-24 seq1151 114 4e-21 seq32305 100 8e-17 seq28127 96.9 1e-15 seq28567 91.5 4e-14 >seq24293 Length=256785 Score = 484 bits (536), Expect = 2e-132 Identities = 704/989 (71%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 205430 AGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 205489 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | ||||| || ||||||||||||| ||| || || || || || |||| Sbjct 205490 GTTAGCACGGTTAATAATATCAGCCCAAGTATTAATTACACGCCC-TTGGCTATCAACTA 205548 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 |||| ||||| || || |||||||| ||||| ||||||||||| ||||| | | | Sbjct 205549 CTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 205608 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 ||| ||| || || | || || ||||| | || || ||||||| | ||| |||| Sbjct 205609 TAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTTGT 205668 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || || | || ||||| ||||| || || |||||||| |||| Sbjct 205669 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 205728 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || ||||| || | || || | || |||||| |||| ||||| | Sbjct 205729 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 205788 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 ||| || | ||||| || | | || ||||||||| || | | || || | Sbjct 205789 CCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 205848 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || || || || | ||| || ||||||||||| || |||||||| || || |||| Sbjct 205849 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 205908 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | |||| ||| || ||||| || ||| ||||||| ||||||||||||||| ||| | Sbjct 205909 ATACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 205968 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATG 41127 | ||||| | ||| |||| ||||| || || ||| || | | ||||||| |||| Sbjct 205969 CTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATG 206028 Query 41128 CCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGT 41187 | ||| ||||| |||| |||||| || | | | ||||||||||| | ||| || Sbjct 206029 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 206088 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 | ||||| || | ||| ||||| | || || | || ||| || ||||||||||||| Sbjct 206089 AACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTATA 206148 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||| || || | | | ||||||||||||||||| || || | || || || || Sbjct 206149 ACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCAG 206208 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | || || || ||||||||||| ||||| | || || || ||||| | Sbjct 206209 AAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAG 206268 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 206269 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA- 206327 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || || || | ||| | || ||||| | ||||||||||| || | ||| || || Sbjct 206328 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGA 206387 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || |||||||| || | ||||||||| || Sbjct 206388 TTTTCGGTGCTGGTTATCCAGTTACAGAA 206416 >seq32758 Length=53022 Score = 149 bits (164), Expect = 2e-31 Identities = 213/299 (71%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||||||||| || |||||||| || || Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| ||| ||| || ||||| || ||| ||||||| ||||||||||||||| ||| Sbjct 20760 TGGAATACAT-CATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | ||| |||| ||||| || || ||| || | | ||||||| Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| |||| |||| | || | | | ||||||||||| | ||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACCC 20938 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| ||||| || | ||| ||||| | || || | || ||| || |||||||| Sbjct 20939 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTT 20997 >seq5280 Length=204759 Score = 149 bits (164), Expect = 2e-31 Identities = 228/321 (71%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| ||||| | || || | || ||| || ||||||||||||| ||| || Sbjct 154056 ACACCAAGTAAGAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCA 154115 Query 41256 TCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 || | | | ||||||||||||||||| || || | || || || | | | ||| Sbjct 154116 TCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCATAAGTAGGA 154175 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || || || |||||||| || ||||| | || || || ||||| || ||||| Sbjct 154176 ATAATGGCACCTGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACG- 154234 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGC 41434 || ||||| |||||||| || || || || || ||||| || || || ||| || || Sbjct 154235 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-AAAGTTGC 154293 Query 41435 AGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGT 41494 || | ||| | || ||||| | ||||||||||| || | ||| || || || ||||| Sbjct 154294 GGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGT 154353 Query 41495 GCTAGTGACCCAGTTACAAAA 41515 ||| || | ||||||||| || Sbjct 154354 GCTGGTTATCCAGTTACAGAA 154374 >seq27014 Length=84001 Score = 125 bits (138), Expect = 2e-24 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 40950 ACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAG 41009 || || || || || | ||| || ||||||||||| || |||||||| || || ||||| Sbjct 20150 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 20091 Query 41010 ACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCC 41069 |||| ||| || |||||| ||| ||||||| || |||| ||||||| ||| | Sbjct 20090 ACAATCATAAAATTGAATA--CCAGAAATTCCTAGAGACATATCATCAGAAAAACTTGCT 20033 Query 41070 TGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGTGTATGC 41128 ||||| | |||||||| ||||| || || ||| || | |||| |||| || ||||| Sbjct 20032 TGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGG-CAATAGGAGTTGAATATGC 19974 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 ||| ||||| |||| |||||| || | | | ||||||||||| Sbjct 19973 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACT 19927 >seq1151 Length=20901 Score = 114 bits (126), Expect = 4e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 || || || ||||||||||| ||||| | || || || ||||| || ||| | || ||| Sbjct 11423 GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCATGAATACCA 11364 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAG 41440 || |||||||| || || || || || ||||| || || || ||| | || | || | Sbjct 11363 TCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTTCGGTCAA 11305 Query 41441 TAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGT 41500 ||| || || ||||| | ||||||||||| || | ||| || || || |||||||| || Sbjct 11304 TAAGGCAGGGATCATAAAAACACCAAACCATCCAAAGTAAAGACGATTTTCGGTGCTGGT 11245 Query 41501 GACCCAGTTACAAAA 41515 | ||||||||| || Sbjct 11244 TATCCAGTTACAGAA 11230 >seq32305 Length=14517 Score = 100 bits (110), Expect = 8e-17 Identities = 172/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 41225 TTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTA 41284 || ||| || ||| ||||||||| ||| || || | | |||||||||||||| || Sbjct 12487 TTCATAAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATA 12546 Query 41285 GAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCC 41344 || || | || || || ||| | |||| | || || || ||||||||||| || Sbjct 12547 AAAGTGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCC 12606 Query 41345 GTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGC 41404 ||| | || || || ||||| || ||||| || ||||| |||||||| || | || | Sbjct 12607 GTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAAC 12666 Query 41405 GATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACAC 41463 || |||| || || || ||| | || || || | ||| | || ||||| | |||| Sbjct 12667 AATGAAGGAAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 12725 Query 41464 CAAACCA 41470 ||||||| Sbjct 12726 CAAACCA 12732 >seq28127 Length=41111 Score = 96.9 bits (106), Expect = 1e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||||| ||| || ||||| | ||| |||| ||||| || Sbjct 29697 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCAAGAAAACT 29638 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| || | | ||||||| ||||| ||| ||||| |||| |||| | || Sbjct 29637 GCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATATCCAGA 29578 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAG 41216 | | | ||||||||||| | ||| ||| ||||| || | ||| ||||| | Sbjct 29577 CGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGA 29518 Query 41217 ACAATGAGTTGATATGGTCCGCCGTT 41242 || || | || ||| || |||||||| Sbjct 29517 ACTATTAATTCATAAGGACCGCCGTT 29492 >seq28567 Length=163623 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 40539 TCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTG 40598 |||||||| ||||| ||||| || || || ||||| |||||||| || | | | | Sbjct 83979 TCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATGGTTAGCACAG 84038 Query 40599 TTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTACTGACTGGTT 40657 |||| | |||| |||||| | ||| || ||| || || || |||||||| ||||| Sbjct 84039 TTAA--ATATCATCCCAAGAATTAATTACAC-ACCCTTGGCTATCAACTACTGATTGGTT 84095 Query 40658 AAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || || |||||||| ||||| ||||||||||| Sbjct 84096 GAAATTGAAACCATTTAGGTTGAAAGCCATAGT 84128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143016823871568