Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq24293 587 9e-163 seq27014 201 1e-46 seq32758 188 8e-43 seq5280 147 2e-30 seq32305 132 5e-26 seq28567 109 6e-19 seq28127 107 2e-18 >seq24293 Length=256785 Score = 587 bits (650), Expect = 9e-163 Identities = 723/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| || || ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 205430 AGCAGCTAGATCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 205489 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| || || ||||||||| ||| || || ||| | ||||| Sbjct 205490 GTTAGCACGGTTAATAATATCAGCCCAAGTATTAATTAC---ACGCCCTTGGCTATCAAC 205546 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 205547 TACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGC 205606 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||| |||||||| | || ||||| | ||||| ||||| ||||| | | ||||| Sbjct 205607 AGTAAACCAGATACCCACTACAGGCCAAGCAGCTAGGAAAAAGTGTAATGAACGAGAGTT 205666 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || |||||||| || || || || Sbjct 205667 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATT 205726 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 205727 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 205786 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| ||||||||||| || || || || || Sbjct 205787 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 205846 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || || Sbjct 205847 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 205906 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| | || |||||||||||||| || |||||||| | ||||| ||| Sbjct 205907 GAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 205966 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | || || | |||||| || ||| || || | || ||||| || || Sbjct 205967 TCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATA 206026 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 206027 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 206086 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | |||| | || |||| || || || || Sbjct 206087 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACTATTAATTCATAAGGACCGCCGTTGTA 206146 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||||||||||||||| || || ||||| | ||| || || Sbjct 206147 TAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGC 206206 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||| || || || ||||| ||||| | || || || | ||| Sbjct 206207 AGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 206266 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 206267 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 206326 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | ||| ||| |||||||| ||||| ||||| |||| || | || Sbjct 206327 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 206386 Query 68315 ATTGTCAACTGAGGTGACCCAGTTACA 68341 ||| || ||| | ||||||||| Sbjct 206387 ATTTTCGGTGCTGGTTATCCAGTTACA 206413 >seq27014 Length=84001 Score = 201 bits (222), Expect = 1e-46 Identities = 259/354 (73%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 67658 AGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTC 67717 ||| ||||| ||||| || || ||||||| | || || || | || | ||||| Sbjct 20269 AGTTTCTTCCTCTTGACCTAATCTGTAACCTTCATTAGCAGATTCATTTTCTTTGGTTTC 20210 Query 67718 TCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAA 67777 ||||| | | |||| | || | ||||| ||||||||||| | || || || |||| Sbjct 20209 CCTGATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTGAT-AGGGAGCCGCCGA- 20152 Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 |||||| ||||| || | ||| || |||||||||||||||||||||||||| || ||||| Sbjct 20151 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 20092 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | ||| | || || |||||||||| || |||| ||| | ||||| ||| | Sbjct 20091 TACAATCATAAAATTGAA--TACCAGAAATTCCTAGAGACATATCATCAGAAAAACTTGC 20034 Query 67898 TTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 |||||| | ||||| | |||||| || ||| || || | | |||| || ||||| Sbjct 20033 TTGACCTATTGGATAAATCAAGAAAACTGCGGTAGCAGCGGCAATAGGAGTTGAATATGC 19974 Query 67958 TACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 19973 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 19920 >seq32758 Length=53022 Score = 188 bits (208), Expect = 8e-43 Identities = 186/239 (78%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || Sbjct 20700 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 20759 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | ||| | || |||||||||||||| || |||||||| | ||||| ||| Sbjct 20760 TGGAATAC-ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 20818 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAG 67952 |||||||| | || || | |||||| || ||| || || | || ||||| || Sbjct 20819 CTTCCTTGACCTATTGGGTAAATCAAGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAA 20878 Query 67953 TATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||||| ||| |||||||| |||||| | |||||| || ||||||||||| |||||| Sbjct 20879 TATGCAACAGCAATCCAAGGTCGCATATCCAGACGGAAACTAAGTTCCCACTCACGACC 20937 >seq5280 Length=204759 Score = 147 bits (162), Expect = 2e-30 Identities = 217/306 (71%), Gaps = 1/306 (0%) Strand=Plus/Plus Query 68036 GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGC 68095 |||||| | |||| | || |||| || || || || ||||| ||||| | | ||| Sbjct 154067 GAAGTGTAGAACTATTATTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGC 154126 Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 |||||||||||| || || ||||| | ||| || || || |||||| || ||||| Sbjct 154127 TGCTTCCCAGATTGGGTAAAAGTGCAAACCAATAGCTGCATAAGTAGGAATAATGGCACC 154186 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGAT 68215 || || || || || ||||| | || || || | ||||||||| | ||||||||| || Sbjct 154187 TGAGATAATATTTTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCAC-GATACCATCAAT 154245 Query 68216 ATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCA 68275 ||| |||||||| || |||||||| ||||| || || | | ||| | | ||| Sbjct 154246 ATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAAAAGTTGCGGTCAATAAGGT 154305 Query 68276 AGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCA 68335 ||| |||||||| ||||| ||||| |||| || | ||||| || ||| | ||| Sbjct 154306 AGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCA 154365 Query 68336 GTTACA 68341 |||||| Sbjct 154366 GTTACA 154371 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 67591 AGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAA 67650 ||||||||||| ||||| ||||||| ||| || || || || |||||||| || || | Sbjct 175621 AGTTGTTGAAACTAGCATATTGGAAGAACAATCGTCCAAAATAACCATGAGCGGCTACGA 175562 Query 67651 TGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAG 67710 | || ||||| ||||| ||||| | ||| ||||||| | || | || || | | | Sbjct 175561 TATTATAAGTTTCTTCCTCTTGACTGAATCTGTAACCTTCATTATCAGATTCATTTTATG 175502 Query 67711 TAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAAC 67770 | ||||| || || | | |||||| |||| ||||| ||||||| ||| || || || | Sbjct 175501 TGGTTTCCCTAATCAAACTAGAAGTTACAAAGGAACCATGCATAGAACTGAATAGGGAGC 175442 Query 67771 CACCGAATACACCTGCTACTCCAAGCATATGGAAT 67805 | ||||| ||||| ||||| || | ||| || ||| Sbjct 175441 CGCCGAACACACCAGCTACACCTAACATGTGAAAT 175407 >seq32305 Length=14517 Score = 132 bits (146), Expect = 5e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| || | || || ||||| ||||| | | || |||||||||||| ||||| |||| Sbjct 12492 AAGGACCGTCGTTGTATAACCATTCATCAACGGATGTTGCTTCCCAGATTGGATAAAAGT 12551 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | | ||| || || ||| |||||| || ||||| || || || ||||| ||||| | Sbjct 12552 GCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCGTAAA 12611 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238 || || || | ||||||||| | |||||||| ||||| ||||||| || |||||| Sbjct 12612 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGAAGCAACAATGA 12671 Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | | ||| || || || | ||| | | ||| ||| |||||||| ||||| |||| Sbjct 12672 AGGAAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 12731 Query 68299 A 68299 | Sbjct 12732 A 12732 >seq28567 Length=163623 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||| | || || ||||||||||| ||||| || || || |||||||||||||| ||| | Sbjct 83969 AGCATCTAGATCTAGAGGGAAGTTATGAGCATTTCGTTCATGCATAACTTCCATGCCATG 84028 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| || || |||||| | ||| || || ||| | ||||| Sbjct 84029 GTTAGCACAGTTAA--ATATCATCCCAAGAATTAATTAC---ACACCCTTGGCTATCAAC 84083 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 84084 TACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGC 84143 Query 67535 AGTGAACCAGATGCAGACCACAGG 67558 ||| ||||| || | || ||||| Sbjct 84144 AGTAAACCAAATACCCACTACAGG 84167 >seq28127 Length=41111 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 67858 TACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCA 67917 |||||||||| || |||||||| | ||||| ||| |||||||| | || || | || Sbjct 29705 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCTATTGGGTAAATCA 29646 Query 67918 AGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCA 67977 |||| || ||| || || | || ||||| || ||||| ||| |||||||| |||| Sbjct 29645 AGAAAACTGCGGTAGCAGCGGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 29586 Query 67978 TACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 || | |||||| || ||||||||||| |||||| Sbjct 29585 TATCCAGACGGAAACTAAGTTCCCACTCACGACC 29552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564100047856320