Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18673 113 8e-20 seq25453 105 1e-17 seq25458 104 4e-17 seq23032 95.1 2e-14 >seq18673 Length=525508 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || || || | |||| |||||| ||||| || || Sbjct 460690 ATTCCACCGCGCAGACGGAGAACAAGGTGGAGAGTAGACTCTTTCTGGATATTGTAATCC 460749 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || || |||||||| || | ||||| ||||||||| Sbjct 460750 GCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGA 460809 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| || || ||||| |||| Sbjct 460810 GGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATTGTCTATGGTGTCGGAGCTCTCA 460869 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || || ||||| |||||||| Sbjct 460870 ACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCAT 460919 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || || || | |||| |||||| ||||| || || Sbjct 461974 ATTCCACCACGCAGACGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATATTGTAATCC 462033 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || || ||||| || || | ||||| ||||||||| Sbjct 462034 GCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCAGGA 462093 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| || || ||||| |||| Sbjct 462094 GGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATTGTCTATGGTGTCGGAGCTCTCA 462153 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || || |||||||||||||| Sbjct 462154 ACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAACAAATATTTGCAT 462203 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || || || | |||| |||||| ||||| || || Sbjct 499203 ATTCCACCACGCAGACGGAGAACAAGGTGGAGCGTAGACTCTTTTTGGATATTGTAATCC 499262 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || || ||||| || || | ||||| ||||||||| Sbjct 499263 GCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCAGGA 499322 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| || || ||||| |||| Sbjct 499323 GGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATTGTCTATGGTGTCGGAGCTCTCA 499382 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || || |||||||||||||| Sbjct 499383 ACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAACAAATATTTGCAT 499432 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| |||||| ||||| || || | || |||| ||| || | || || ||| Sbjct 466596 GTAGACTCTTTCTTGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCG 466655 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 | || || | ||||| ||||||||||| || ||||||||||| || | ||| | || Sbjct 466656 GTGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAAATTTCGCCTTC 466715 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | ||| || || ||||| ||||| || ||||| ||||| || || || || || Sbjct 466716 ACATTGTCTATGGTGTCGGAGCTCTCAATCTCGAGAGTAATAGTCTTGCCGGTGAGGATT 466775 Query 193344 TTTACAAATATTTGCAT 193360 || ||||| |||||||| Sbjct 466776 TTAACAAAGATTTGCAT 466792 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| |||||| ||||| || || | || |||| ||| || | || || ||| Sbjct 503825 GTAGACTCTTTCTTGATATTGTAATCCGCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCG 503884 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 | || || | ||||| ||||||||||| || ||||||||||| || | ||| | || Sbjct 503885 GTGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAAATTTCGCCTTC 503944 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | ||| || || ||||| ||||| || ||||| ||||| || || || || || Sbjct 503945 ACATTGTCTATGGTGTCGGAGCTCTCAATCTCGAGAGTAATAGTCTTGCCGGTGAGGATT 504004 Query 193344 TTTACAAATATTTGCAT 193360 || ||||| |||||||| Sbjct 504005 TTAACAAAGATTTGCAT 504021 >seq25453 Length=344677 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| |||| ||||| ||||||||||| ||||| || ||||| || || Sbjct 137534 TGCTTTCCGGCAAAGATTAGCCTCTGCTGATCAGGAGGGATTCCCTCCTTATCCTGAATC 137593 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || || |||| ||| ||| || || ||| |||||| || || || || || || || Sbjct 137594 TTTGTCTTTACATTATCAATTGTGTCAGAACTCTCAACCTCGAGTGTGATGGTCTTGCCA 137653 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 137654 GTGAGAGTCTTGACAAAGATTTGCAT 137679 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 193128 TATATACCACCTC---TCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||||| |||||| ||| || | || ||||||| || | ||| || || ||| Sbjct 136532 TATATAGCACCTCCCCTCAGGCGCAAAACAAGATGCAGCGTGGACTCCTTTTGGATGTTA 136591 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAAT-CTCTGTTG 193243 ||||| | | || || ||| || | ||||| || ||||| || ||| | ||| || Sbjct 136592 TAGTCTGCAAGTGTCCTGCCATCCTCAAGCTGTTTACCAGCAAAGATCAATTCGCTGCTG 136651 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| ||||||||||| || || ||||||| ||| | ||| ||| || || || Sbjct 136652 ATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCTTTAACATTGTCAATCGTGTCAGA 136711 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | || || || || || || | || || ||||| || ||||| Sbjct 136712 ACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGCAT 136768 >seq25458 Length=394795 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || || || | |||| |||||| || || || || Sbjct 385168 ATTCCACCACGCAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCC 385109 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || || ||||| || || | ||||| ||||||||| Sbjct 385108 GCTAGAGTTCGTCCATCCTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCAGGA 385049 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| || || ||||| |||| Sbjct 385048 GGAATACCTTCTTTATCCTGAATTTTCGCCTTCACATTGTCTATGGTGTCGGAGCTCTCA 384989 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || || ||||| |||||||| Sbjct 384988 ACCTCGAGAGTAATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCAT 384939 >seq23032 Length=1100947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | | || |||| ||| | |||| || || || |||||||| Sbjct 133901 ATACCACCACGGAGCCTGAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTATAGTCA 133842 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || |||||||| || || | ||||||||||| || Sbjct 133841 GCCAATGTTCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGTTGATCTGGG 133782 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| | ||| | ||| || || ||||| |||| Sbjct 133781 GGAATCCCCTCCTTGTCCTGGATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCA 133722 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| |||||||| Sbjct 133721 ACCTCAAGAGTTATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 133672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895136425568640