Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq12962 212 2e-50 >seq12962 Length=520891 Score = 212 bits (234), Expect = 2e-50 Identities = 242/323 (75%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 40419 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATC 40478 ||||| || |||||| ||| | |||| |||||||| || | ||||| | |||| Sbjct 88838 CCGTAGGTGATGATCTGGCTGACGTGGTCGCGGCCGTACTTGCGCGCCACGTAGTCGATC 88897 Query 40479 ACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40536 |||||| | || || | ||| |||||||||||||| || ||||| |||||||| | Sbjct 88898 ACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGTT 88955 Query 40537 CGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40596 |||| || ||||| |||||||| | || | || |||||||||||||||||||||| Sbjct 88956 CGGGATTGAGGAAGCGCTCGAACAGCAGGTTGAACTGCAGCGGGTCGAGGTCGGTGATCT 89015 Query 40597 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGC 40656 || || | || ||||||||||| || | ||||| || || ||||| ||| || || Sbjct 89016 TCAGCACCCACGCCACCAGCGAACCCGCGCCCGAGCCGCGGCCCGGGCCCACCGGGATGC 89075 Query 40657 CGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCA 40716 |||||| ||| ||||| |||||||||||| |||| |||||||| |||||||||| Sbjct 89076 CGTTCTGCTTGCCCCAGTTGATGAAGTCCGCCACGATCAGGAAGTAGCCGGGGAAGCCCA 89135 Query 40717 TCTGGATGATCATGTCGATCTCG 40739 ||| |||||| | ||| | |||| Sbjct 89136 TCTTGATGATGACGTCCAGCTCG 89158 Score = 174 bits (192), Expect = 5e-39 Identities = 349/511 (68%), Gaps = 6/511 (1%) Strand=Plus/Plus Query 39173 GCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGG 39232 ||||| ||||||| ||| | ||| || ||| ||||||| || | | | | | | Sbjct 87586 GCCCTGGCCCACGCCCTTGATCGCGCCGAGACCGTAGCGGATTTCCTTCGGCTTGGTCGC 87645 Query 39233 GGTGAACGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCG 39292 |||| | || |||| | |||||| |||||||| || ||||| || |||| Sbjct 87646 CACGAACATGAAGTCCGAGGCGTTCACGTCCGGCGGCAGCACGGTGAGGCCGAT-CGCCT 87704 Query 39293 AG-ACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAG 39351 | ||||| ||| | | || || ||||| ||| ||| |||| | || || | Sbjct 87705 TGGACTCGTCGATGAAGGTCACCGCCTTGTCGGTGTTGTCCATGTCCGACGAGATCGTCG 87764 Query 39352 CCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTC 39411 | |||||| ||||||| |||||||||| ||||||||| || || |||| | || || Sbjct 87765 CGGCCATGAACTCGGCGGGGTAGTGCGCCTTCAGCCAGGCGGTCTGGTAGGAGACCAGCG 87824 Query 39412 CGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCC 39471 |||| || || | ||||| |||||||||| ||||||| |||||| ||| || ||| Sbjct 87825 CGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATCAGGTCGA 87884 Query 39472 ACACTGCCTGGATGGCACCGTCCGAGTAGCCTCG--CTCGCGCGCTCCCTTCTGGAAGTT 39529 | | | | | | ||| | | |||| || || | ||| |||| |||| || Sbjct 87885 AGATTTCGTCGGCCTTGCCG-CTGCTGAGCC-CGTCCTTGGCCGCGCCCTCGCGGAACTT 87942 Query 39530 CACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTC 39589 || ||||| |||| ||||| ||||||||||||||||| ||||| |||||||| Sbjct 87943 GGCGCGTTCCTTCGCCATCTCCTCGACTTTCTTCTTGCCCATCGCGCGGCGCAGCAGGTC 88002 Query 39590 GGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTA 39649 ||| ||||| ||||| ||| | | || |||||| | || | ||||||||||||||| Sbjct 88003 GGCGCCGCCGAGCGTGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGGTA 88062 Query 39650 GATGATGAGCTGGAAGGTCGGGTCCAGGATC 39680 || |||| | ||||| | ||||||| Sbjct 88063 GACCATGATGCCGTAGGTCTCTTTCAGGATC 88093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163102937576736