Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7458 147 6e-30 seq938 113 1e-19 seq11877 104 7e-17 seq4185 104 7e-17 seq9699 93.3 1e-13 seq8991 93.3 1e-13 seq5221 89.7 2e-12 >seq7458 Length=425881 Score = 147 bits (162), Expect = 6e-30 Identities = 243/344 (71%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || || ||| |||||| || ||| || || ||||| ||| | || || | Sbjct 301303 ATTCCTGACAGTCCCATCATACTTAACCATTATATCCTCCATCGCCTTCACCAATCGCCT 301244 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||| |||||| ||| ||||| || || ||||| |||| ||| | | |||||| Sbjct 301243 TTGAATATATCCAGTTTCAGAAGTTTTCACTGCAGTATCTATTAAACCTTCCCTACCACC 301184 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||||| || ||||||| || | | ||| |||| || || Sbjct 301183 CATAGCATGAAAGAAAAACTCTTGAGGAGTCAGCCCCCGAAGATATGAGTTCTCCACAAA 301124 Query 302718 ACCACGCGCCTC-GGGCGA--ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 || || ||| |||| | ||| || ||||||||||| ||||| || | | ||| Sbjct 301123 CCCTCGACTCTCTGGGCCATAATCATCT---TTGGTAAAGTGGGGCAGCGTGC-GATCT- 301069 Query 302775 AT--AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 || | || | ||||| ||||| || ||||| ||||| || |||| ||| | | |||| Sbjct 301068 ATGAACCCAAAAGGGATTCGCTTACCTTCAACATTCTGTTGCCCCACGCAAGCAGTCATT 301009 Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || || | | ||| ||||| || ||||| | ||||| Sbjct 301008 TGAGATATGTTGATAAAACTTCCCTTAGATCCAGCTGTGACCAT 300965 >seq938 Length=1173706 Score = 113 bits (124), Expect = 1e-19 Identities = 224/329 (68%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 133081 TATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATT 133140 ||||||||| ||| || || |||||||| | ||||| || || ||| || || Sbjct 1021317 TATGTTCCCCATTGAGTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCTTCCTT 1021258 Query 133141 TTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGG 133200 |||||| | || |||||||| || | |||| ||||||||||||||||| |||| Sbjct 1021257 TTGGACAGCCGAGGAGGTAGATTTGTCGCAGGACCTCGCCCACTGGGAAGCCCTCACTGC 1021198 Query 133201 GGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTG 133259 ||||| || ||||| || ||| || | || || |||||||| ||||| || | Sbjct 1021197 CGATGAGAAGCATTTCATCAAACATG-TTCTGGCCTTCTTTGCTGCCTCCGATGGCATCG 1021139 Query 133260 TTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCT 133319 || | || ||| ||| |||| ||| |||||| || | |||| || || || | Sbjct 1021138 TTTTGGAGAATCTAGCTGGCAGGTTCATGAAAGAAGTCCAGGTTTCCGAGGCGCGCGCGT 1021079 Query 133320 TTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTG 133379 |||| || | |||||||| || || || ||||| || | || | ||| | | Sbjct 1021078 TTTACGGATTCCAGATTGCAATCGAGAACATCCACTCCGAGATGTACAGTCTTCTGCTCG 1021019 Query 133380 ATACTTACATCAAAGATACCGTCCAGAAG 133408 | || |||||||||||| | | | ||||| Sbjct 1021018 AAACATACATCAAAGATTCGGCCGAGAAG 1020990 >seq11877 Length=307084 Score = 104 bits (114), Expect = 7e-17 Identities = 314/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 ||||| || | || |||||||| | ||||| ||| | | || ||| ||| |||| Sbjct 285762 ATATCTGCACGATTAGTTGCTGCAATTACAATTATACCAGTA--TTCCCTTCAAAACCAT 285705 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||||| | || || ||||| || ||||||||||||||| |||| Sbjct 285704 CCATTTCTGTTAATAGCTGGTTCAGTGTCTGCTCCCTTTCATCATTT---CCTC------ 285654 Query 289007 CACCCGAATC-GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACAC 289063 |||| | | | |||| ||| ||||||||||||||||| |||| || | | | Sbjct 285653 CACCAATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATACTATGC 285594 Query 289064 ACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAA 289123 | || | ||||| | || | || | || | || || || ||||||| ||||| Sbjct 285593 ATGGGGCATTTTCCTTGGCCTTCTTGAAAAGGTCGCGGACTCGTGAGGCTCCAACACCAA 285534 Query 289124 CATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCT 289182 || |||| || |||||||| ||| | || | | || | |||| ||| ||||| || Sbjct 285533 CAAACATCTCAACAAATTCGGAACCTGA-AATGGAGAAAAATGGCACACCCGCTTCACCA 285475 Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242 || | ||| | ||||| | ||||| || || ||||| || || | ||||||||| Sbjct 285474 GCAATGGCCTTGGCCAGCAAGGTCTTTCCAGTACCAGGAGGACCAATAAGAAGAACTCCC 285415 Query 289243 TTTGG--TACTTTTGCCC-CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 ||||| ||| ||| |||||| || || |||| || |||| | || || || Sbjct 285414 TTTGGAATACGAGCACCCACAGCAG---TAAATCTCTCGGGCTTCTTAAGGAACTCCACC 285358 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||| || || | ||||| || || || || |||||| ||||||| Sbjct 285357 ACCTCCATAAAATCTTGCTTTGCTTCGTCTACCCCAGCGACATCATCAAAAGT 285305 >seq4185 Length=266478 Score = 104 bits (114), Expect = 7e-17 Identities = 210/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 || |||||||| ||||| || | | ||| || | | |||||| || | |||||| Sbjct 81369 GCGTCAATTTCATCAATAAAGACTATACATGGTGCAGTTTGTCGTGCTTCTTGAAATAAG 81428 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 || || | ||| | ||||| |||||| |||| || || || || || | |||| Sbjct 81429 CTTCGCACCCTGGAAGGTCCAACTCCAACAAACATCTCCACGAAATCCGATCCAGATATG 81488 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 || || | ||| || || |||||| |||| | || ||||||||||| || ||| Sbjct 81489 GAAAAAAAAGGAACACCTGACTCTCCTGCTGTTGCCTTAGCAAGAAGTGTCTTTCCAGTT 81548 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTT 289274 ||||| || || | | || | || ||||| | |||||| || ||| || |||||| Sbjct 81549 CCAGGAGGGCCAACAAGAAGTGCACCTTTTGGAATTTTTGCTCCTAGC-TCCTCATATTT 81607 Query 289275 CTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCC 289334 | || | |||| ||| | |||| ||| | ||| | ||||||||| |||||||| Sbjct 81608 TTTGGGATTTTTTAGAAAATGCACAAACTCCATTATTTCTTGTTTTGCCTCGTCACATCC 81667 Query 289335 TGCTACATC 289343 || ||||| Sbjct 81668 AGCCACATC 81676 >seq9699 Length=532930 Score = 93.3 bits (102), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| |||||| ||||||| || ||||||||||| | |||| | ||| | || || Sbjct 61309 TTTTCCACCAACCGCATCAAGCTCATCAATGAAAATAATTGACGGCGCATTCTTCCTAGC 61368 Query 289083 AA--TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || ||| ||| | ||||| | || | ||| || |||||| | | ||| |||||| Sbjct 61369 AACTTTGAAAAGA--TCTCTAATGCGAGCTGCACCTCTCCCAACAAATAATTCCACAAAT 61426 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||| ||| || ||| || || | ||| ||||| || || ||||| | || || Sbjct 61427 TCACTAGCAGAAACTGAAAAAAAAGGTACCCCAGCTTCTCCAGCAACTGCGCGGGCTAGT 61486 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | |||||| |||||||| || || || | | || || ||| | |||| | ||||||| Sbjct 61487 AATGTCTTTCCTGTTCCTGGAGGACCTACAAGCAGCACGCCCCTGGGTAATCTTGCCCC 61545 >seq8991 Length=111177 Score = 93.3 bits (102), Expect = 1e-13 Identities = 274/410 (67%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 |||||||||||| || | || | ||| ||||| || ||| | |||||||| ||| Sbjct 20667 AAATCCATCCAT--TTCTACAAGTAATTGGTTAAGGGTGCTTTCACGCTCATCATTAGAA 20724 Query 288997 CCTCTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || || |||| || || || ||| | | |||| |||||||| || || ||||| Sbjct 20725 CCAGCAAAACCACCACG--TC-CT-CTTGCTCTGCCAATTGCATCAATCTCATCGATGAA 20780 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | || || | | ||| || || | ||| || | || || | || | ||| Sbjct 20781 TACGATACTAGGTGCACATTGCCTTGCCTCTTGAAACAAGTTCCTAACCCTTGACGGTCC 20840 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTG 289174 || |||||| ||||||| | || |||||| | |||| | || | || | ||| | Sbjct 20841 AACGCCAACAAACATTTCCATGAAATCAGAACCAGATA-TGGACAAAAAAGGCACACCAG 20899 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 ||| || || ||| | |||||||| || ||||| || || || ||||| | | || Sbjct 20900 ATTCACCAGCAGTTGCTTTTGCCAGAAGCGTTTTACCCGTCCCTGGAGGTCCAACCAGTA 20959 Query 289235 GAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || | || || || | ||| || |||||| || ||| |||| |||| ||||||| || Sbjct 20960 GAGCACCTTTGGGAATTTTGGCTCCCAGC-TCCTCATACTTCTTAGGGTTCTTTAAGAAG 21018 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| ||| || || | || || |||||||| || || ||||| Sbjct 21019 TGAACAAACTCCATAATCTCCTGCTTCGCTTCATCACAGCCAGCAACATC 21068 >seq5221 Length=374195 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 || ||||||| |||||||||||| | |||| | | || | || ||| ||| | Sbjct 249325 CAAACATGGATCCTGTAAGCATCACTTTGGTCAAACAACCTTTCTTTCAAAAAGTGAGCT 249266 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || |||| |||||| ||||| || ||||||||||| || || ||||||||||| ||| Sbjct 249265 GCGCCATGTGCAATCATGCAATCTCGTTCCATTTCACCAAATCGGAGACCACCATCACGA 249206 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 | | || || ||||| || || || || Sbjct 249205 GATCGTCCTTCAGCAGGTTGCCGTGTAAG 249177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1464241496174424