Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq12962 203 1e-47 >seq12962 Length=520891 Score = 203 bits (224), Expect = 1e-47 Identities = 240/323 (74%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATG 40226 ||||| || |||||| ||| | |||| |||||||| || | ||||| | ||| Sbjct 88838 CCGTAGGTGATGATCTGGCTGACGTGGTCGCGGCCGTACTTGCGCGCCACGTAGTCGATC 88897 Query 40227 ACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40284 |||||| | || || | ||| |||||||||||||| || ||||| |||||||| | Sbjct 88898 ACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGTT 88955 Query 40285 CGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40344 |||| || |||||||||||||| | || | || |||||||||||||||||||||| Sbjct 88956 CGGGATTGAGGAAGCGCTCGAACAGCAGGTTGAACTGCAGCGGGTCGAGGTCGGTGATCT 89015 Query 40345 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCC 40404 || || | || ||||||||||| || | ||||| || || ||||| ||| || | Sbjct 89016 TCAGCACCCACGCCACCAGCGAACCCGCGCCCGAGCCGCGGCCCGGGCCCACCGGGATGC 89075 Query 40405 CGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCA 40464 |||||| ||| ||||| |||||||||||| |||| |||||||| ||||| |||| Sbjct 89076 CGTTCTGCTTGCCCCAGTTGATGAAGTCCGCCACGATCAGGAAGTAGCCGGGGAAGCCCA 89135 Query 40465 TCTGGATGATCATGTCGATCTCG 40487 ||| |||||| | ||| | |||| Sbjct 89136 TCTTGATGATGACGTCCAGCTCG 89158 Score = 154 bits (170), Expect = 5e-33 Identities = 327/482 (68%), Gaps = 6/482 (1%) Strand=Plus/Plus Query 38921 GCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGG 38980 ||||| ||||||| ||| | ||| || ||| ||||||| || | | | | | | Sbjct 87586 GCCCTGGCCCACGCCCTTGATCGCGCCGAGACCGTAGCGGATTTCCTTCGGCTTGGTCGC 87645 Query 38981 GGTGAACGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCG 39040 |||| | || |||| | |||||| |||||||| || ||||| || |||| Sbjct 87646 CACGAACATGAAGTCCGAGGCGTTCACGTCCGGCGGCAGCACGGTGAGGCCGAT-CGCCT 87704 Query 39041 TGC-CTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAG 39099 || |||| ||| | | || || ||||| ||| ||| |||| | || || | Sbjct 87705 TGGACTCGTCGATGAAGGTCACCGCCTTGTCGGTGTTGTCCATGTCCGACGAGATCGTCG 87764 Query 39100 CCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTC 39159 | |||||| ||||||| |||||||||| ||||| ||| || || |||| | || || Sbjct 87765 CGGCCATGAACTCGGCGGGGTAGTGCGCCTTCAGCCAGGCGGTCTGGTAGGAGACCAGCG 87824 Query 39160 CGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCC 39219 |||| || || | ||||| |||||||||| ||||||| ||||| ||| || ||| Sbjct 87825 CGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATCAGGTCGA 87884 Query 39220 ACACTGCCTGGATGGCACCGTCCGAGTAGCCTCG--CTCGCGCGCTCCCTTCTGGAAGTT 39277 | | | | | | ||| | | |||| || || | ||| |||| |||| || Sbjct 87885 AGATTTCGTCGGCCTTGCCG-CTGCTGAGCC-CGTCCTTGGCCGCGCCCTCGCGGAACTT 87942 Query 39278 CACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTC 39337 || ||||| |||| ||||| ||||||||||||||||| ||||| |||||||| Sbjct 87943 GGCGCGTTCCTTCGCCATCTCCTCGACTTTCTTCTTGCCCATCGCGCGGCGCAGCAGGTC 88002 Query 39338 GGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTA 39397 ||| || || ||||| ||| | | || ||| || | || | ||||||||||||||| Sbjct 88003 GGCGCCGCCGAGCGTGTAGCCGCCGACGATCTGCGCCATCTGCATCACCTGCTCCTGGTA 88062 Query 39398 GA 39399 || Sbjct 88063 GA 88064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162545609227536