Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq24293 540 1e-148 seq1880 212 7e-50 seq32758 158 1e-33 seq5280 138 1e-27 seq28567 118 1e-21 seq32305 111 2e-19 seq1151 96.9 4e-15 seq28127 93.3 5e-14 >seq24293 Length=256785 Score = 540 bits (598), Expect = 1e-148 Identities = 714/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 206356 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 206298 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 206297 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206238 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || ||||| ||||| | |||| |||| || || || || ||||| || || || Sbjct 206237 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAAT 206178 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||||||| | | || || ||||| || ||||| |||||||| | ||| | | Sbjct 206177 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGT 206118 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 206117 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 206058 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| |||||||||| ||| ||||| ||||| ||||| | || || || Sbjct 206057 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGC 205998 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 205997 AGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 || ||||| ||||| || ||| | || ||||| || || |||||||| || |||||||| Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 || || ||| ||||||||| ||| | ||||| || || |||||||| ||||| || Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 ||| | || ||||| | | ||||| || || ||||| || || | || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||||| || | ||||| || | | ||||| | || ||||| ||||| Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAA 73132 ||| || || ||||| |||||||||||||| || ||| || || || | | | | Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTG-TAATTAATA 205519 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 205518 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 205459 Query 73193 CACACAACTTCCCACTAGACCTAGC 73217 | || |||||||| ||||| ||||| Sbjct 205458 CTCATAACTTCCCTCTAGATCTAGC 205434 >seq1880 Length=405587 Score = 212 bits (234), Expect = 7e-50 Identities = 414/612 (68%), Gaps = 21/612 (3%) Strand=Plus/Minus Query 73790 TTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCA 73849 || || || ||||| |||| ||| | |||||||||| |||||| || |||| ||| Sbjct 130677 TTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTAGTGTAGCA 130618 Query 73850 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 73909 || || ||||| | || | || | || || || || ||| || || || |||||| Sbjct 130617 GCTATATTTCGATTCATACTCTTTTTTCAAGGATTTCATAATTGGACACTGAACCCATTT 130558 Query 73910 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 73969 ||||||||||| || || ||| || | || | || || |||| || || |||||||| Sbjct 130557 CATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCT 130498 Query 73970 ACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCT 74029 || ||| | || || || | |||||| || | | | | ||| | Sbjct 130497 ACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTGCAA-AT 130456 Query 74030 ACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCT 74089 ||| ||| | || || | || || || | ||||| |||||| ||| | || ||| Sbjct 130455 ACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCT 130399 Query 74090 AACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTC 74149 ||| | || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| Sbjct 130398 AACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 130339 Query 74150 CTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTA 74209 ||||||| || ||||| || | ||| | |||| || | || | || ||| | Sbjct 130338 TTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTG 130279 Query 74210 GCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCA 74269 || || ||||| | || || ||||| || ||||| || || | ||||| ||||| || Sbjct 130278 GCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCT 130219 Query 74270 GAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATG 74329 || ||||| || |||||||| || || ||||| | || |||||||| | || |||||| Sbjct 130218 GAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGCTTGGATG 130159 Query 74330 TCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGC 74389 | || ||||| || ||||| ||| || | ||||| || || || | ||||| || Sbjct 130158 GCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGA 130099 Query 74390 AACGCACTATAA 74401 ||||| || ||| Sbjct 130098 AACGCTCTTTAA 130087 >seq32758 Length=53022 Score = 158 bits (174), Expect = 1e-33 Identities = 215/299 (72%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 ||||| |||||||| | ||| | || | |||||| | |||| | || |||||| Sbjct 20997 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 20938 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || | ||| |||||||||| ||| ||||| Sbjct 20937 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 20878 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| | || || ||||| ||| | | || ||| | ||||| || Sbjct 20877 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 20818 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| ||||| || || ||||| ||||| || ||| | || ||||| Sbjct 20817 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTATTCCAG 20759 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806 || || |||||||| || |||||||| || || ||| ||||||||| ||| | ||||| Sbjct 20758 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 138 bits (152), Expect = 1e-27 Identities = 208/289 (72%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTC 72352 |||||||| | ||| | || || || |||| || ||| | || ||||| ||||||| Sbjct 154314 ATGATCCC-TACCTTATTGACCGCAACTT-TTGTATTTATTATTGCCTTCATTGCTGCTC 154257 Query 72353 CTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA 72412 ||||||| ||||| || || ||| | ||||| ||| | || ||| | | || || || | Sbjct 154256 CTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAA 154198 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || ||||| ||||| | |||| ||| || || || || ||||| || || | Sbjct 154197 ATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAA 154138 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTA 72521 ||||||||||||| | | || || ||||| || ||||| |||||||| Sbjct 154137 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTA 154089 >seq28567 Length=163623 Score = 118 bits (130), Expect = 1e-21 Identities = 148/200 (74%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 |||||||| || | ||||| || | | ||||| | || ||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAA---CATG 73136 || ||||| |||||||||||||| || ||| || || || |||| | | || Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTG----TGTAATTAATTCTTG 84052 Query 73137 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196 || ||| || |||| | || |||| ||| |||||||||||||||||| ||||||| || Sbjct 84051 GGATGATATT--TAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCA 83994 Query 73197 CAACTTCCCACTAGACCTAG 73216 |||||||| ||||| |||| Sbjct 83993 TAACTTCCCTCTAGATCTAG 83974 >seq32305 Length=14517 Score = 111 bits (122), Expect = 2e-19 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 72338 ||||||||||| || |||||||| | ||| | || || || || || ||| | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTTC 12674 Query 72339 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 72398 ||||| | |||| ||||||| ||||| || || || | ||||| ||| | || ||| | Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 72399 CTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATT 72458 | || || ||||| || ||||| ||||| | |||| |||| || || || || Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 72459 ACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCC 72518 ||||| ||||| |||||||||||| | | | || || ||||| || |||| ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 72519 TTA 72521 ||| Sbjct 12493 TTA 12491 >seq1151 Length=20901 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||| || ||||| | ||| |||| ||||||||||| || Sbjct 11230 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACTTTGGATGGTTTGGTGTTTTT 11289 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| || ||| | || | || || || ||| | || ||||| |||||||| Sbjct 11290 ATGATCCC-TGCCTTATTGACCGAAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 11348 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || ||||| ||| | || ||| | | || || ||||| Sbjct 11349 TCCAGTAGATATTGATGGTATTCATGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 11408 Query 72414 CATCATCTCTGGTGC 72428 || ||||| ||||| Sbjct 11409 TATTATCTCAGGTGC 11423 >seq28127 Length=41111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 ||||| |||||||| | ||| | || | |||||| | |||| | || |||||| Sbjct 29492 AACGGCGGTCCTTATGAATTAATAGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 29551 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || | ||| |||||||||| ||| ||||| Sbjct 29552 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTTGCATAT 29611 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| | || || ||||| ||| | | || ||| | ||||| || Sbjct 29612 TCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGT 29671 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTA 72721 || |||||||||||||| ||||| || || |||| Sbjct 29672 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569996686068160