Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq29890 185 1e-40 seq33810 168 8e-36 seq938 161 1e-33 seq12962 105 8e-17 seq33763 86.0 8e-11 >seq29890 Length=111316 Score = 185 bits (204), Expect = 1e-40 Identities = 234/314 (75%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| ||||||||||| |||||||| ||||||| |||| | || ||| Sbjct 72727 GAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCGAGACCTGG 72786 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||||| || |||||||| |||||||||||| |||||||| Sbjct 72787 ACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATGCGGCGAAG 72846 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||||| || || |||||| | | || | |||||| | || Sbjct 72847 AAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCCAGT-GTCG 72905 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || | | || |||||||| || ||||||| ||||| ||||| || ||||| Sbjct 72906 GAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 72965 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTGTCG 869929 ||||||||| | ||| |||| | || ||||| | ||| || || | |||| ||| | Sbjct 72966 CATCTCCCAGATTTGAGGGTACTGTATCGGGAACA-TACAGAATCGATCTGGGTTTGGGG 73024 Query 869930 CGCAACAGGGGTTC 869943 || | |||||||| Sbjct 73025 CG-AGGAGGGGTTC 73037 >seq33810 Length=274286 Score = 168 bits (186), Expect = 8e-36 Identities = 261/360 (73%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 ||||| || | ||| || |||| || || | ||| | |||| | |||||||||||| Sbjct 175931 TGCGGATGCGAGGCCGCCTGCACCGCATCCACCGCCAGCTTCACGTTGCCGTCGGTGCCG 175872 Query 1726745 TTCTTGAAGCCGAT-GGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTC 1726803 ||||||||||| | || ||| | |||| |||| |||| ||||||||||||||||||||| Sbjct 175871 TTCTTGAAGCCCACCGGGCAG-GACAGTCCCGAAGCCAGCTCGCGGTGCACCTGGCTCTC 175813 Query 1726804 GGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA-AGGGGCCACCA 1726862 ||| || || ||||| | |||||||| ||||||||||| || | || | ||| | Sbjct 175812 GGTGGTACGTGCGCCGATCGCGCCCCAGGCCACCAGGTCGGCGAGGTACTGCGGCGAGAT 175753 Query 1726863 GAGGACTGAGAAACTCGACGGCCACGGGCTGATCG-ACGGCGACGACGAGATCGCGCAAC 1726921 || | | ||| |||||| | || ||| | | || | ||| || || ||||||| | Sbjct 175752 GATGTC-GAGGAACTCG-CTGC--CGGCCGGCACGCCCAGCG-CGTTGATGTCGCGCAGC 175698 Query 1726922 AGGCGGCGCGACGCCG-TCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTC 1726980 |||| ||||| || | |||||| | | | |||| | ||||| ||||| ||||| Sbjct 175697 AGGCCGCGCG-CGATGCGCAGGCCCTGGTTGATGCGGAAGCTGCCGTCCAGGTCCGGGTC 175639 Query 1726981 GCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGAC 1727040 | || ||| |||||||| || || || ||||||||||| |||| || | ||||| || Sbjct 175638 GTTGATCAGTCCCTTCCAGCCCACCGTGGTGCGCGGCTTCTCGAAGTACACCCGCATCAC 175579 >seq938 Length=1173706 Score = 161 bits (178), Expect = 1e-33 Identities = 216/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| || |||||||| |||||||| || | | |||| | || ||| Sbjct 1021042 GAGTGGATGTTCTCGATTGCAATCTGGAATCCGTAAAACGCGCGCGCCTCGGAAACCTGG 1021101 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||| || || ||||| |||||||| ||| ||| || || Sbjct 1021102 ACTTCTTTCATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAGGCAGCAAAG 1021161 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| || || ||||| || || ||| ||| | |||| | |||||||| || Sbjct 1021162 AAGGCCAGAACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCCCAGTGGGCG 1021221 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || | ||| | || ||||||||||| ||||| | || || |||||||| ||||| Sbjct 1021222 AGGTCCTGCG-ACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCCTTCTTGTA 1021280 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||| ||||| | || |||| || ||||| | ||| ||||||| ||||| Sbjct 1021281 CATTTCCCAAATCTGAGGGTACTCAATGGGGAACA-TACAGAAGCGGTCTGGGTT 1021334 Score = 129 bits (142), Expect = 7e-24 Identities = 179/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| ||| | | || |||||||||||||| ||||| | |||||| ||||||||| Sbjct 1020784 TCGTTGGAAAAAGTTAATCCTGGCATGAGGCCGCGTTTCTTCAACCAAAATATGGCGCAG 1020843 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || || || ||||| || || ||||| ||| |||||| ||| |||||||||||||| Sbjct 1020844 AAGCTCCCGGAGAAGAATATCCCCTCAACGCAAGCAAAGGCGAGTAGCCGCTCGGCAAAA 1020903 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 | ||| || || |||||| | ||||| | |||||| ||| ||| | Sbjct 1020904 GATTCGGATCC------GTCGATCCAACGTAGGGCCCACTTGGCCTTCTTCTCCACGCAT 1020957 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTG 869440 || || ||||| || || || |||||| | ||| ||||||| || |||| || || Sbjct 1020958 GGGACTGTGTCAATAGCTCGGAAGAGGCGACTCTTCTCGGCCGAATCTTTGATGTATGTT 1021017 Query 869441 TCGATCAGGAG 869451 |||| ||| || Sbjct 1021018 TCGAGCAGAAG 1021028 >seq12962 Length=520891 Score = 105 bits (116), Expect = 8e-17 Identities = 285/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 18070 TTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGC 18129 ||||||||| | || | ||||||||||| ||||| |||||| ||| | |||||||| Sbjct 271989 TTCGGCAAGCTCTTCACCGTCACCACCTTCGGCGAAAGCCACGGGCCGGCCATCGGCTGC 272048 Query 18130 ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTC-AGTT 18188 | ||||||||| |||||| || |||| | | | || || ||| ||| | | | Sbjct 272049 GTGATCGACGGCTGCCCGCCGGGCCTGCCGATCGACCCGGAGGAGTTCC-GCCACGACCT 272107 Query 18189 GGATCGGCGC-CGACCGGGCCAGGGCGCACTTT-CCACGCCGCGCAACGAGCCCGATCGC 18246 || || ||| | ||||| || | ||| | | || ||| ||| |||| | || Sbjct 272108 TGACCGCCGCGCCACCGG--CAAGTCGCGCCATACCTCGCAACGCCGCGAGGCGGACGAG 272165 Query 18247 GTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTT 18306 || |||| || ||| | | | |||| ||| |||| |||| |||| || | Sbjct 272166 GTGGAGATCCTTTCCGGCGTGTACGAGGGCCGCACCACCGGCACGCCGGTCGCGCTGCTG 272225 Query 18307 GTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--TGCCGCGGC 18364 | ||| ||||||||| | ||||| |||||| | | | |||| | Sbjct 272226 ATCCGCAATACCGACCAGCGCAGCAAGGACTACGGCGACATCGCCTCGACCTTCCGC--C 272283 Query 18365 CCTCACACGCCGACTACACCTACATGGC-CAAGTACGGCATCAAGGCGTCGTCGGGCGGA 18423 || || |||||||||||||| |||| |||||||||||| | || ||||| Sbjct 272284 CCGGCCATGCCGACTACACCTA-TTGGCAGAAGTACGGCATCCGCGACCCGCGCGGCGGC 272342 Query 18424 GGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAA 18483 ||||| || || || ||||||||| ||||||||| ||||||| | | ||||| ||||| Sbjct 272343 GGCCGTTCCTCGGCGCGCGAGACCACCATGCGCGTGGCCGCCGCGGTGATCGCCAAGAAA 272402 Query 18484 TGGCT 18488 ||||| Sbjct 272403 TGGCT 272407 >seq33763 Length=191500 Score = 86.0 bits (94), Expect = 8e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 92594 GATGCACTCGGCGATCTGGCGCG-TGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACA 92652 |||||| | ||||||||| |||| |||| |||||| |||||||||||| | | | Sbjct 20949 GATGCAGTGGGCGATCTG-CGCGGTGAGCTTCTCCTGTACCTGGAAGCGGCGCGCATAGC 21007 Query 92653 TGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCA 92712 ||| || | ||| | | |||||| | ||||| | | || |||||||||||||| | Sbjct 21008 CGTCCACCACGCGGGCCAGCTTGCTGATGCCGACCACGCGGCAGGTGGGCAGGTAGCCGA 21067 Query 92713 CGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGT 92772 ||||||| ||| | | ||| || ||||| ||||| | || |||| || Sbjct 21068 CGTGGGCGCGGCCGACGATCGGCGCCATGTGGTGTTCGCAGTGGCTCTCGAACTCGATGT 21127 Query 92773 CGCGCACGATCACCATCTCGCCCGAGGCCTC 92803 |||||| | |||||||||| | || |||| Sbjct 21128 CGCGCAGCACCACCATCTCGTCGTAGCCCTC 21158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6074169549475384