Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq78578 217 4e-52 seq33768 138 3e-28 >seq78578 Length=1014 Score = 217 bits (240), Expect = 4e-52 Identities = 235/307 (77%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||||||| |||||| || |||||||| | | ||||| | || |||| || || Sbjct 241 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC---CACTCGCGGGT 297 Query 30145 TCTGAGTGAACCCTCGACGTA-CAGTTGCTGACCCTTCTTTACG-TGCTGCCCGACGATC 30202 | ||| | || |||||||| || | ||| ||||| | | | || || |||| Sbjct 298 GCGGAGAGTGCCTTCGACGTAGCACTGGCT--CCCTTTTCGCAGATACTCACCCGCGATT 355 Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 356 TCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCG 415 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 |||||||| || |||||||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 416 GTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCG 475 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || || | ||||| ||||||||| || ||| ||||||| || ||||| |||||||| Sbjct 476 TTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTG 535 Query 30383 ACGCCTC 30389 ||||||| Sbjct 536 ACGCCTC 542 >seq33768 Length=156001 Score = 138 bits (152), Expect = 3e-28 Identities = 231/333 (69%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | ||||||||||| || | ||||||| || || | |||||| || Sbjct 53448 CCGCCCAGCATCTGCATCTC---------GTTGGCGATGATGTCGGTGGAGTAGCGCTCG 53398 Query 30116 TGACCGTCCTGCGCCTGCCACTT-TCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTG 30174 ||||||| | |||| ||| || | || |||||||||| ||| | ||| | Sbjct 53397 ATGCCGTCCTTGTCGGTGTACTTGTCG-GTGCGCAGCGAACCCTCGATGTAGACCTGCCG 53339 Query 30175 ACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 || ||||| | || || ||| ||||||| |||| ||| ||||| | | ||||||||| Sbjct 53338 GCCTTTCTTCAGGTACTCGCCGGCGATCTCGGCCAGCTTGCCGAACAGCTTCACGCGGTG 53279 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 |||||||||||||||||| ||| |||| |||||||||| |||| || ||||| Sbjct 53278 CCATTCGGTGCGCTCCTGGCGCTCGCCGCTCTGCTTGTCGGTCCACTGTTCCGAAGTGGC 53219 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 || | | | |||| | || ||||| || | ||||| |||||||| || | || Sbjct 53218 GATGCGCAGGCTGGTGATGGCGGTGCCGCTGCCGGTGTAGCGGGTTTCCGGATCGGCGCC 53159 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 | |||||| || | ||||| ||||| | ||| Sbjct 53158 TAGGTTGCCGACGATGATGACCTTGTTGATGCC 53126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144943587593088