Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq35681 113 1e-20 >seq35681 Length=3718 Score = 113 bits (124), Expect = 1e-20 Identities = 574/908 (63%), Gaps = 60/908 (7%) Strand=Plus/Minus Query 8894 ATGGACATGAACGACGCGGCGAAGTCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTG 8953 || |||| ||||| ||| |||| || | ||| ||||| || | || | || |||| Sbjct 936 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGATGCG---CTTG 880 Query 8954 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACTTCCACGGAATAGGTG 9010 | ||||||||| || ||||||||||||||||| | ||| | |||| | || ||| Sbjct 879 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 821 Query 9011 AAGCCTTCGGCGT---CCGGGCG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 9065 || |||| || ||||| | ||| | | ||||||| ||||||| | | |||| Sbjct 820 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 765 Query 9066 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTTGTAGCGCTCAGTGACGCGCCGGATGG 9125 |||||| ||||||||| | || ||||||| ||||||| | | ||| Sbjct 764 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCT 705 Query 9126 CGCCGGCCTGTTCCTCGTA-GTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAAC 9184 ||||| | | | | | || | || || | |||| |||||| | |||||| Sbjct 704 GCTTTGCCTGATGCGTGAACGACG-TCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAAC 646 Query 9185 TTGCCGCCCGGCACCAGGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9244 |||||||||||| |||||||||| Sbjct 645 TTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCGGGTTCGA 586 Query 9245 NNNTTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGC 9304 ||||||| || |||| ||| ||||| |||||| ||||||||||||| | ||| Sbjct 585 C---TGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGGG 529 Query 9305 CGGAAGTCCTCCCATACTTCCCAGGT--GTCCACCATCCCGCGCATGAGCATCGAGAGCG 9362 | |||| ||||| |||| || | | || | | | || | || || ||| Sbjct 528 TCGTAGTCAGTCCATA-GGCCCAAGTCGGAATAGCAGCGCTC-CAGGTCGGTCAAG-GCG 472 Query 9363 GAAACACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTT 9422 || | | | | || |||||||||| |||||| | ||| | |||| || Sbjct 471 --AATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTT 414 Query 9423 CGCTGTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGT 9482 || |||||||||| ||| | || | |||||||||||||||||||||| | |||| Sbjct 413 CGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGT 354 Query 9483 CCTCTACCGTCACGATCTGGCGCCACTGACCGTCAGCGCA----GC----GCATGCCGTT 9534 | | | ||| | || || ||||||||| ||||| | ||| || ||||| | Sbjct 353 CTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATCT 294 Query 9535 GCGCAGCGCGGTGTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTT 9594 |||| ||| ||| |||| | | ||| | | ||| | ||||| | | Sbjct 293 GCGCTTCGC----TGGGCCACG----GCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCG 245 Query 9595 GAACAGTGCGCCGGACCAGAACGGGTAGGCCTCATGCG---ACAAGCTGGACGGCGTGGA 9651 |||| |||||| |||| |||| || |||| |||| | |||| |||||||| Sbjct 244 GAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGA 188 Query 9652 GAAGTACGTTTGCCGCCAGTGCTTGTGGAT----CGCCATGCCGGACGCGACCTTGCGCA 9707 |||||| || | ||||| ||| || || ||||| || || ||| | ||| Sbjct 187 GAAGTAGGTCAGGCGCCA---CTTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCA 131 Query 9708 GTTCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCT 9767 | | |||||| || | |||||| ||||||| ||| | || |||||||||||||| Sbjct 130 GCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCT 71 Query 9768 GCGCGGTG 9775 |||| ||| Sbjct 70 GCGCCGTG 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127274686556736