Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq78578 114 3e-21 seq33768 82.4 2e-11 >seq78578 Length=1014 Score = 114 bits (126), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 215 CGGCCATTCAT---GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCC 271 |||||||||| | | || ||||| || || |||||||| | || || | | ||| Sbjct 227 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC 286 Query 272 TGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAC 331 |||| ||| || | || | |||||| | | | || ||| ||||| ||||| ||| Sbjct 287 ---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 343 Query 332 TGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCT 391 | | |||||||| || | ||| ||||||| || ||||||||||| || || || Sbjct 344 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 403 Query 392 TTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCC 451 | || || || ||||||||||| |||||| |||| ||||| | | || | || Sbjct 404 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 463 Query 452 ACGCCGTTGCCGTTCGGCAGCGT-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 ||| ||||||||||||| | || ||||| ||| || ||| ||| |||||| | || Sbjct 464 ACGGCGTTGCCGTTCGG-GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAG 522 Query 511 TTCTACTTTGTT 522 |||||||| Sbjct 523 AATCACTTTGTT 534 >seq33768 Length=156001 Score = 82.4 bits (90), Expect = 2e-11 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 235 GATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGCGC 294 ||| || || | |||||| || | ||| ||| ||| ||||| || |||||| Sbjct 53419 GATGTCGGTGGAGTAGCGCTCGATGCCGTCCTTGTCGGTGTACTTGTCGGTGCGCAGCGA 53360 Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 || || ||| | |||| | |||||| |||||||| || |||||| || |||||||| Sbjct 53359 ACCCTCGATGTAGACCTGCCGGCCTTTCTTCAGGTACTCGCCGGCGATCTCGGCCAGCTT 53300 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATC 414 ||||| | ||||||||||||||| || || | ||| || ||||||| || Sbjct 53299 GCCGAACAGCTTCACGCGGTGCCATTCGGTGCGCTCCTGGCGCTCGCCGCTCTGCTTGTC 53240 Query 415 CTTCCAGGTTTCAGACGTGGCAAT-TGATAACTGCGCCACGCCGTTGCCGTTCGGCAGCG 473 |||| ||| || ||||| || | ||| | | | || ||||| | | | | | Sbjct 53239 GGTCCACTGTTCCGAAGTGGCGATGCGCAGGCTG-GTGATGGCGGTGCCGCT-GCCGGTG 53182 Query 474 T-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 | |||| ||| |||||| ||||| |||||| | ||| Sbjct 53181 TAGCGGGTTTCCGGATCGGCGCCTAGGTTGCCGACGAT 53144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134755625369712