Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq24293 565 7e-157 seq32758 174 5e-39 seq27014 174 5e-39 seq5280 152 2e-32 seq32305 100 8e-17 seq28567 100 8e-17 seq28127 100 8e-17 >seq24293 Length=256785 Score = 565 bits (626), Expect = 7e-157 Identities = 721/983 (73%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 206411 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 206352 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| |||||||| ||||| |||| Sbjct 206351 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 206293 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || ||||| |||||||| || | Sbjct 206292 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 206233 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | ||||| |||||||| || Sbjct 206232 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCACTTTTACCCAATCTG 206175 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | |||||||| || || | || | | || | Sbjct 206174 GGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCT 206115 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||||||||| | || || Sbjct 206114 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 206055 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| ||||| || || | || || Sbjct 206054 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGT 205995 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | | ||||| | ||||| || || || || |||| ||||||| | || || | Sbjct 205994 -TTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 205936 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||| | ||| | |||||||| || || || ||||| || |||||||| | Sbjct 205935 CTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 205876 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| |||| Sbjct 205875 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 205816 Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 205815 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 205757 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 205756 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 205697 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| ||||||||| ||||| ||||||| ||||| ||| Sbjct 205696 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCT 205637 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || || || || ||||| |||| || || || || ||||| || || Sbjct 205636 GCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 205577 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | | || ||||| ||| ||||| Sbjct 205576 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATACT 205517 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 205516 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 205457 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 ||||||||||| || || || || Sbjct 205456 CATAACTTCCCTCTAGATCTAGC 205434 >seq32758 Length=53022 Score = 174 bits (192), Expect = 5e-39 Identities = 189/247 (77%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||||||||| | || || | ||| | ||||||||| ||| Sbjct 20944 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGT 20885 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| ||||| || || | || || ||||| | | ||||| | |||| Sbjct 20884 TGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGT-TTTCTTGATTTACCCAATAGGTC 20826 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || || |||| ||||||| | || || || ||||| ||||| | ||| | | Sbjct 20825 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-G 20767 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||||| Sbjct 20766 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 20707 Query 20070 TATTCGG 20076 ||||||| Sbjct 20706 TATTCGG 20700 >seq27014 Length=84001 Score = 174 bits (192), Expect = 5e-39 Identities = 261/362 (72%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| ||| Sbjct 19913 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 19972 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||| |||| || || | || || ||||| | | || || | |||| Sbjct 19973 TGCATATTCAACTCCTATTGCCGCTGCTACCGCAGT-TTTCTTGATTTATCCAATAGGTC 20031 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | | || || || |||| |||| || | || || || |||| ||||| | ||| | | Sbjct 20032 AAGCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTG 20089 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||||| Sbjct 20090 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 20149 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 || |||| || || ||| ||||||| ||||| ||||| |||| || | || | ||| | Sbjct 20150 TA-TCGGCGGCTCCCTA-TCAGTGCTATGCATGGTTC-CTTGGTAATTTCTAGTTTGATC 20206 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || | ||| | ||| | || | ||||||| || || ||||| ||||| Sbjct 20207 AGGGAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAA 20266 Query 20189 AC 20190 || Sbjct 20267 AC 20268 >seq5280 Length=204759 Score = 152 bits (168), Expect = 2e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| |||||||| ||||| || || ||||||||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || |||| || || | | ||| | | || || || || | ||| | | || | || Sbjct 175468 TCCTTTGTAACTTC-TAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGG 175526 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| || | ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 175527 TTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 175586 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAA 20256 ||| ||| |||||||||| ||| ||||||||| Sbjct 175587 ACGATTGTTCTTCCAATATGCTAGTTTCAACAA 175619 Score = 114 bits (126), Expect = 4e-21 Identities = 198/282 (70%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 154369 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 154310 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | | || || |||||||| |||||||| ||||| |||| Sbjct 154309 CCC-TACCTTATTGACCGCAACTTTTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 154251 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| ||| | ||||| || || || || ||||| ||||| || || | Sbjct 154250 TAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATTA 154192 Query 19689 TATCGGGAGCCGTCGTTCCGAGCA--GCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | ||| || || || | ||||| |||||||| || Sbjct 154191 TCTCAGGTGCCATTATTCCTACTTATGCA--GCTATTGGTTTGCACTTTTACCCAATCTG 154134 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 |||||| || ||||||||||| | |||||||| || || Sbjct 154133 GGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCC 154092 >seq32305 Length=14517 Score = 100 bits (110), Expect = 8e-17 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || |||||| | ||||||| ||| | ||||| || |||||||| || || ||||| || Sbjct 12684 TTTATTATTTCCTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 12625 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 || || || ||||| |||||||| || || || || ||| | |||| | | ||| Sbjct 12624 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 12565 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || || || | ||||| || ||||| |||||||| | || ||||||||||| | | Sbjct 12564 --GCTATTGGTTTGCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTAT 12507 Query 19776 ACAACG 19781 |||||| Sbjct 12506 ACAACG 12501 >seq28567 Length=163623 Score = 100 bits (110), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 20291 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 20350 || || || || |||||||| |||| || || || || ||||| || || || || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 20351 GGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCT 20410 |||||||| || ||||| || | | || | | | || |||| ||| || |||||| | Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 20411 GACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAAC 20470 || ||| || ||||||| | || | || || ||||||||||| |||||||||||| Sbjct 84047 GATATTT--AACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 20471 TTCCCACTTGACCT 20484 ||||| || || || Sbjct 83989 TTCCCTCTAGATCT 83976 >seq28127 Length=41111 Score = 100 bits (110), Expect = 8e-17 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||||||||| | || || | ||| | ||||||||| ||| Sbjct 29545 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGT 29604 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| ||||| || || | || || ||||| | | ||||| | |||| Sbjct 29605 TGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGT-TTTCTTGATTTACCCAATAGGTC 29663 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTA 19991 | || || || || |||| ||||||| | || || || |||| Sbjct 29664 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148118766816816