Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq24293 545 7e-151 seq32758 149 2e-31 seq5280 143 8e-30 seq27014 141 3e-29 seq28567 109 2e-19 seq32305 100 8e-17 seq28127 95.1 4e-15 >seq24293 Length=256785 Score = 545 bits (604), Expect = 7e-151 Identities = 715/983 (73%), Gaps = 8/983 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 206411 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 206352 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || |||||||| |||||||| || || |||| Sbjct 206351 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 206293 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || || |||||||| || | Sbjct 206292 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 206233 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | ||| || || || | ||||| |||||||| || Sbjct 206232 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCACTTTTACCCAATCTG 206175 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | |||||||| || || | || | | || | Sbjct 206174 GGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGTTCT 206115 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 206114 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 206055 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || || || || | || || Sbjct 206054 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGT 205995 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | | |||||| | |||||||| |||| || | |||||| | || ||||| Sbjct 205994 TTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTC 205935 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||| | ||| | || ||||| || || || ||||| || |||||||| || Sbjct 205934 TGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 205875 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||| | || || ||||| || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 205874 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 205815 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| || | |||| Sbjct 205814 CTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 205756 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||| ||||| |||||||| |||||||||||||| ||||| ||||| | Sbjct 205755 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCC 205696 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||||||| |||||| || ||||| ||||||| ||||| |||| Sbjct 205695 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGCTG 205636 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | ||||| || || || || ||||| |||| || || || || ||||| || || | Sbjct 205635 CTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACC 205576 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | | || ||||| |||||||||| Sbjct 205575 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATACTT 205516 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| || | || || |||||||| || | ||||| |||||||| |||||||||| Sbjct 205515 GGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 205456 Query 29594 ATAACTTCCCACTTGATCTGGCT 29616 |||||||||| || ||||| ||| Sbjct 205455 ATAACTTCCCTCTAGATCTAGCT 205433 >seq32758 Length=53022 Score = 149 bits (164), Expect = 2e-31 Identities = 195/269 (72%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 20967 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 20908 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 | ||| | || |||||| ||| ||||| |||||||| || || || || | || ||| Sbjct 20907 GATATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTT 20848 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | |||||| | |||||||| |||| || | |||||| | || ||||| Sbjct 20847 TTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 20788 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||| | ||| | || ||||| || || || ||||| || |||||||| || Sbjct 20787 GGTACTTTCAATTTTATGAT-GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 20729 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGG 29204 |||||| | || || ||||| || ||||| Sbjct 20728 CACATGTTAGGTGTAGCTGGTGTATTCGG 20700 >seq5280 Length=204759 Score = 143 bits (158), Expect = 8e-30 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29173 TTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGT 29232 || |||||| | || || ||||| |||||||| ||||| ||||| ||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 29233 TCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGG 29291 || |||| || || | | ||| | | || || || || | ||| | || | || Sbjct 175468 TCCTTTGTAACTTC-TAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGG 175526 Query 29292 TTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGG 29351 ||||| || | ||||| ||||| |||||||| |||||||||||||| ||||| ||||| Sbjct 175527 TTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 175586 Query 29352 ACGTTTGATCTTCCAATATGCTTCTTTCAATAA 29384 ||| ||| |||||||||||||| |||||| || Sbjct 175587 ACGATTGTTCTTCCAATATGCTAGTTTCAACAA 175619 Score = 114 bits (126), Expect = 4e-21 Identities = 198/282 (70%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 154369 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 154310 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | | || || |||||||| |||||||| || || |||| Sbjct 154309 CCC-TACCTTATTGACCGCAACTTTTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 154251 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| ||| | |||||||| ||||| ||| || || ||||| || || | Sbjct 154250 TAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAATATTA 154192 Query 28817 TATCGGGAGCCGTCGTACCGAGCA--GCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | ||| || || || | ||||| |||||||| || Sbjct 154191 TCTCAGGTGCCATTATTCCTACTTATGCA--GCTATTGGTTTGCACTTTTACCCAATCTG 154134 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 |||||| || ||||||||||| | |||||||| || || Sbjct 154133 GGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCC 154092 >seq27014 Length=84001 Score = 141 bits (156), Expect = 3e-29 Identities = 203/281 (72%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||||||||| || |||||||||||||| | || || || ||| | || |||||| ||| Sbjct 19913 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 19972 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| ||| |||| | || || || | || |||||| | | || ||| | ||||| Sbjct 19973 TGCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCA 20032 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 || |||| || | ||| || | || ||||| || | ||||| | ||| | || Sbjct 20033 AGCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGT 20090 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 ||||| || || || ||||| || |||||||| || |||||| | || || ||||| || Sbjct 20091 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20150 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 |||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 20151 -ATCGGCGGCTCCCTA-TCAGTGCTATGCATGGTTC-CTTG 20188 >seq28567 Length=163623 Score = 109 bits (120), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 29419 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 29478 || || || || |||||||| |||| || || || || ||||| || || || || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 29479 GGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCT 29538 ||||| || || ||||| || | | || | | | || |||| |||||| |||||| | Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 29539 GATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAAC 29598 ||| || || | ||||||| ||| | ||||| |||||||| || |||||||||||| Sbjct 84047 GATATTT--AACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 29599 TTCCCACTTGATCT 29612 ||||| || ||||| Sbjct 83989 TTCCCTCTAGATCT 83976 >seq32305 Length=14517 Score = 100 bits (110), Expect = 8e-17 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || |||||| | ||||||| || | ||||| || |||||||| || || |||||||| Sbjct 12684 TTTATTATTTCCTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 12625 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 ||||| ||| || || |||||||| || || || || ||| | | || | | ||| Sbjct 12624 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 12565 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || || || | ||||| || ||||| |||||||| | || ||||||||||| | | Sbjct 12564 --GCTATTGGTTTGCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTAT 12507 Query 28904 ACAACG 28909 |||||| Sbjct 12506 ACAACG 12501 >seq28127 Length=41111 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 29522 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 29581 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 | ||| | || |||||| ||| ||||| |||||||| || || || || | || ||| Sbjct 29582 GATATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTT 29641 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | |||||| | |||||||| |||| || | |||||| | || ||||| Sbjct 29642 TTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 29701 Query 29116 GG 29117 || Sbjct 29702 GG 29703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145965887022192