Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq24293 603 3e-168 seq27014 208 2e-49 seq32758 190 6e-44 seq5280 158 3e-34 seq28567 118 3e-22 seq1151 116 1e-21 seq32305 114 4e-21 seq28127 107 5e-19 seq16835 95.1 3e-15 >seq24293 Length=256785 Score = 603 bits (668), Expect = 3e-168 Identities = 733/989 (74%), Gaps = 10/989 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || || |||||||| || || |||||||| || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| | Sbjct 206356 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 206299 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||||| Sbjct 206298 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 206239 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 206238 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCACTTTTACCC 206181 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||||||| | |||||||| || || | || | | Sbjct 206180 AATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAAT 206121 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 206120 AGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 206061 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || ||||||||||||||||| || | Sbjct 206060 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTAC 206001 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | | || ||| | |||||||| ||| || | ||||||| | || Sbjct 206000 CGCAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 205941 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||| | ||| |||||||||||||||| || |||||||| ||||| Sbjct 205940 AATTTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 205881 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| Sbjct 205880 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 205821 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || Sbjct 205820 TGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 205762 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || || |||||||| |||| Sbjct 205761 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 205702 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || |||||||| ||||| |||| || || Sbjct 205701 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCC 205642 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || |||||| | || | || | ||||| ||||| | Sbjct 205641 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTT 205582 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | ||||| || || || ||||| || | |||| | | | || ||||| ||| Sbjct 205581 TCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTA 205522 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 ||||||||||||| ||| | || ||||||||||| || | || || ||||| ||||||| Sbjct 205521 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 205462 Query 19679 ATGCTCATAACTTCCCACTTGATTTGGCT 19707 |||||||||||||||| || ||| | ||| Sbjct 205461 ATGCTCATAACTTCCCTCTAGATCTAGCT 205433 >seq27014 Length=84001 Score = 208 bits (230), Expect = 2e-49 Identities = 267/362 (74%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||||||||| || |||||||||||||| | || || || ||||| ||||||||| ||| Sbjct 19913 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 19972 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || ||| ||||| ||||||| || | || || ||| | | |||||| | ||||| Sbjct 19973 TGCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCA 20032 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 || ||| || | |||| || | || ||| ||||| ||||| | ||| |||| Sbjct 20033 AGCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGT 20090 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 |||||||||||| || |||||||| |||||||| || |||||| | ||||| |||||||| Sbjct 20091 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20150 Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 19348 ||||||| || ||| | ||||| ||||| ||||| |||| || | || | ||| | Sbjct 20151 -ATCGGCGGCTCCCTA-TCAGTGCTATGCATGGTTC-CTTGGTAATTTCTAGTTTGATCA 20207 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 | ||||| | ||| | | |||| || | || |||| || || ||||| ||||| | Sbjct 20208 GGGAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAA 20267 Query 19409 CT 19410 || Sbjct 20268 CT 20269 >seq32758 Length=53022 Score = 190 bits (210), Expect = 6e-44 Identities = 205/270 (76%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 20967 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 20908 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 | ||||| ||||||||| |||||| || ||||||||||||||||| || | || || Sbjct 20907 GATATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTT 20848 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | | || ||| | |||||||| ||| || | ||||||| | || ||| | Sbjct 20847 TTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 20788 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||| | ||| ||||||||||||||| || |||||||| |||||||| || Sbjct 20787 GGTACTTTCAATTTTATG-ATGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 20729 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGC 19296 |||||| | ||||| |||||||| |||||| Sbjct 20728 CACATGTTAGGTGTAGCTGGTGTATTCGGC 20699 >seq5280 Length=204759 Score = 158 bits (174), Expect = 3e-34 Identities = 213/288 (74%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || || |||||||| || || |||||||| || Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| ||||| || |||||||||||||||||||| | Sbjct 154314 ATGATCCC-TACCTTATTGACCGCAACT-TTTGTATTTATTATTGCCTTCATTGCTGCTC 154257 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||| | Sbjct 154256 CTCCAGTAGATATTGATGGTAT-CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAA 154198 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | ||| || || || | ||||| ||||| Sbjct 154197 ATATTATCTCAGGTGCCATTATTCCTACTTATGCA--GCTATTGGTTTGCACTTTTACCC 154140 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 ||| |||||||| || ||||||||||| | |||||||| || || Sbjct 154139 AATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCC 154092 Score = 131 bits (144), Expect = 5e-26 Identities = 184/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| ||||||||||||||||| || ||||| ||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || | || | ||| | | ||||| || || | | |||| | || | || Sbjct 175468 TCCTTTGTAAC-TTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGG 175526 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| || | ||||| ||||| |||||||| || || || |||||||| |||||||| Sbjct 175527 TTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 175586 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | | ||||| || || |||||||| |||| || | || || || | Sbjct 175587 ACGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGA 175646 Query 19503 TGCTTGGCCTGTGGTT 19518 | |||||||||| ||| Sbjct 175647 TTCTTGGCCTGTTGTT 175662 >seq28567 Length=163623 Score = 118 bits (130), Expect = 3e-22 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 ||||| || || ||||||||| | || | || | ||||| ||||| |||||| | ||| Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || || || ||||| || | |||| | | | || |||| ||| || |||||| | Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 || ||| || ||||||||| ||| | || || ||||| ||||| |||||||||||| Sbjct 84047 GATATTT--AACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 19690 TTCCCACTTGAT 19701 ||||| || ||| Sbjct 83989 TTCCCTCTAGAT 83978 >seq1151 Length=20901 Score = 116 bits (128), Expect = 1e-21 Identities = 147/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || || |||||||| | || |||||||| | Sbjct 11230 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACTTTGGATGGTTTGGTGTTTTT 11289 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || || || ||| | | ||| | ||| || |||||||||||||||||||| | Sbjct 11290 ATGATCCC-TGCCTTATTGACCGAAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 11347 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || | || |||||| | || ||| ||||| ||||||| Sbjct 11348 CTCCAGTAGATATTGATGGTATTCATGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 11407 Query 18902 ACATCATATCGGGAGCC 18918 | || || || || ||| Sbjct 11408 ATATTATCTCAGGTGCC 11424 >seq32305 Length=14517 Score = 114 bits (126), Expect = 4e-21 Identities = 172/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 18768 CTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATT 18825 ||||||||| ||||||| || | || ||| | || ||| | ||| || |||||| Sbjct 12733 CTGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATT 12676 Query 18826 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGT 18885 ||||||||| ||| |||| ||||| |||||||| || || || |||||| | || | Sbjct 12675 TCCTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 12616 Query 18886 CTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCG 18943 || ||||| |||||||| || || || || ||| | |||| | | ||| || || | Sbjct 12615 CTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTG 12558 Query 18944 GACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACG 19000 | | ||||| || ||||| |||||||| | || ||||||||||| | ||||||| Sbjct 12557 GTTTGCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACG 12501 >seq28127 Length=41111 Score = 107 bits (118), Expect = 5e-19 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 29522 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 29581 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 | ||||| ||||||||| |||||| || ||||||||||||||||| || | || || Sbjct 29582 GATATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTT 29641 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | | || ||| | |||||||| ||| || | ||||||| | || ||| | Sbjct 29642 TTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCT 29701 Query 19207 GGTA 19210 |||| Sbjct 29702 GGTA 29705 >seq16835 Length=343710 Score = 95.1 bits (104), Expect = 3e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110 |||||||| || |||||| ||||||| | || || || ||||| ||||||||| |||| Sbjct 191824 TACATGGGTCGTGAGTGGAAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTT 191765 Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 || || ||||||||||||||||| || | || || ||| | | || ||| | |||||| Sbjct 191764 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 191705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140475406599216