Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq938 302 6e-76 seq29890 212 9e-49 seq33810 132 7e-25 seq28025 89.7 7e-12 >seq938 Length=1173706 Score = 302 bits (334), Expect = 6e-76 Identities = 399/543 (73%), Gaps = 14/543 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||||||| ||| |||||||||| |||| | ||| |||||||||||| | Sbjct 1021334 AACCCAGACCGCTTCTGTA-TGTTCCCCATTGAGTACCCTCAGATTTGGGAAATGTAC-A 1021277 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTC 1455851 | |||||||| || ||||||||||| ||||||||||| || | | ||| | || | | Sbjct 1021276 AGAAGGCCGAAGCTTCCTTTTGGACAGCCGAGGAGGTAGATTT-GTCGCAGGACCTCGCC 1021218 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 ||||||| | || | | ||| ||| ||||||||||| || || || ||||| ||| Sbjct 1021217 CACTGGGAAGCCCTCACTGCCGATGAGAAGCATTTCATCAAACATGTTCTGGCCTTCTTT 1021158 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 || ||| |||||||||||| ||||| || || ||| | || |||||||| ||||| Sbjct 1021157 -GCTGCCTCCGATGGCATCGTTTTGGAGAATCTAGCTGGCAGGTTCATGAAAGAAGTCCA 1021099 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | ||||| || ||||||||| |||||||| || ||||| ||||||||||| || Sbjct 1021098 GGTTTCCGAGGCGCGCGCGTTTTACGGATTCCAGATTGCAATCGAGAACATCCACTCCGA 1021039 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| || ||| |||| || ||| |||| || ||| ||||||| | |||||| Sbjct 1021038 GATGTACAGTCTTCTGCTCGAAACATACATCAAAGATTCGGCCGAGAAGAGTCGCCTCTT 1020979 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 || || || ||||| || || | ||| ||| |||||| | ||||| | ||||| Sbjct 1020978 CCGAGCTATTGACACAGTCCCATGCGTGGAGAAGAAGGCCAAGTGGGCCCTACGTTGGAT 1020919 Query 1456152 CAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGG 1456209 | || || ||| | |||||||||||||| ||| |||||| |||| ||||| Sbjct 1020918 C------GACGGATCCGAATCTTTTGCCGAGCGGCTACTCGCCTTTGCTTGCGTTGAGGG 1020865 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || ||||| || || ||||||||||| |||||| | ||||| |||||||||||||| Sbjct 1020864 GATATTCTTCTCCGGGAGCTTCTGCGCCATATTTTGGTTGAAGAAACGCGGCCTCATGCC 1020805 Query 1456270 CGG 1456272 || Sbjct 1020804 AGG 1020802 >seq29890 Length=111316 Score = 212 bits (234), Expect = 9e-49 Identities = 367/525 (70%), Gaps = 10/525 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || ||||| |||||| | |||| |||| |||||||| Sbjct 73000 TGTTCCCGATACAGTACCCTCAAATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 72942 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || ||||||||||| | | || | | | | |||||| | || | | Sbjct 72941 TGGACGGCTGAGGAGGTCGATTTGTCCCAGGATCTCCGAC-ACTGGGACGCTCTTACTGC 72883 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 |||||| ||||||||||| ||||| |||||||| || |||||| ||| ||||||| Sbjct 72882 TGACGAGAAGCATTTCATCAAACACGTGCTCGCCTTCTT-CGCCGCATCCGACGGCATCG 72824 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | |||||||| || ||||| || ||||| |||||||| | | ||||| || | Sbjct 72823 TATTGGAGAACCTTGCGGGCCGATTCATGAAGGAGGTCCAGGTCTCGGAGGCTCGGGCCT 72764 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| || ||||||||||| || ||||||||||| || | ||| ||| || ||| Sbjct 72763 TCTACGGCTTTCAGATCGCCATAGAGAACATCCACTCCGAGATGTACAGCCTCTTGCTCG 72704 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | || ||| |||| || | | |||||| ||| ||||| | ||| ||||| || | | Sbjct 72703 AAACTTACATCAAAGATTCCGCGGAGAAGAACCTGCTCTTCCACGCGATCGAAACCATCC 72644 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | | || |||||| | ||||| | |||||| | || || ||| Sbjct 72643 CCTGCATCGAGACGAAGGCCAAGTGGGCCCTCCGCTGGATCGA-GGGGTCGGAGTCG--- 72588 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| ||||| | || | ||| || | ||||| || || || || || || || || Sbjct 72587 -TTTGCGGAGCGAATAGTGGCCTTCGCTTGTGTCGAAGGTATATTCTTTTCCGGAAGCTT 72529 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| |||| || |||||||| ||||| || || ||||| || || Sbjct 72528 CTGCTCCATATTCTGGCTCAAAAAGCGAGGGCTAATGCCGGGACT 72484 >seq33810 Length=274286 Score = 132 bits (146), Expect = 7e-25 Identities = 240/342 (70%), Gaps = 13/342 (4%) Strand=Plus/Plus Query 165555 GTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGT 165614 || ||||| | || |||| ||||||||||| || || || |||||||| ||| || Sbjct 175579 GTGATGCGGGTGTACTTCGAGAAGCCGCGCACCACGGTGGGCTGGAAGGGACTGATCAAC 175638 Query 165615 GACCCCGATCTTGATGGCTCGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGCCTG 165674 ||||| || || || ||| | |||| | | ||||| | ||||| ||||| Sbjct 175639 GACCCGGACCTGGACGGCAGCTTCCGCATCAACCAGGGCCTGCGCATCGCGCGCGGCCTG 175698 Query 165675 CTGCGTGATCTCGTCG---TCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCCT 165731 ||||| || || || | | ||| || || ||| | |||||| ||| | | | Sbjct 175699 CTGCGCGACATCAACGCGCTGGGCGTG--CCGGCC---GGCAG-CGAGTTCCTC-GACAT 175751 Query 165732 CTGGTGGCCCCC-TATTTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCAC 165790 | | ||| | || | || |||||||| | |||||||| |||| || || ||||| Sbjct 175752 CATCTCGCCGCAGTACCTCGCCGACCTGGTGGCCTGGGGCGCGATCGGCGCACGTACCAC 175811 Query 165791 CGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCC-ATTGGCTTCAAAA 165849 |||||||||||||||||||||| |||| |||| ||| | |||||| | |||||||| | Sbjct 175812 CGAGAGCCAGGTGCACCGCGAGCTGGCTTCGGGACTGTC-CTGCCCGGTGGGCTTCAAGA 175870 Query 165850 ACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCCGTGC 165891 || |||||||||||| |||| | ||| | ||||| |||| Sbjct 175871 ACGGCACCGACGGCAACGTGAAGCTGGCGGTGGATGCGGTGC 175912 >seq28025 Length=485539 Score = 89.7 bits (98), Expect = 7e-12 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||| ||| || | | ||| ||| |||| |||| || Sbjct 74961 ATCTTCAAGGTGCTGAAGCAGGTGCATCCC-GA--CATCGGG--ATC-TCCAGCAAGGCC 74908 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC-CGAGGCCGG 725029 ||| || |||||| || |||| || || |||| || ||| | ||| || Sbjct 74907 ATGGGTATAATGAACAGCTTCATCAATGATATTTTCGAGAA-ATTGGCGCACGAAGCATC 74849 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 |||||| ||||| | ||||||| ||| || | | || |||||||||||||| || Sbjct 74848 TCGCCTAGCGCGGTACAACAAGAAGCCCACCATTACCTCTCGGGAGATCCAGACCGCGGT 74789 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || || || | |||||| || || |||||||||| Sbjct 74788 CAGGCTTGTGCTGCCCGGTGAGCTCGCGAAGCACGCTGTTTCGGAGGGCACCA 74736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7139061481179824