Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq24293 603 1e-167 seq1880 464 7e-126 seq32758 181 1e-40 seq27014 174 2e-38 seq5280 158 1e-33 seq32305 132 5e-26 seq28127 104 3e-17 seq28567 98.7 1e-15 >seq24293 Length=256785 Score = 603 bits (668), Expect = 1e-167 Identities = 731/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| ||||| ||| | || ||| | || |||| ||||| ||||| | Sbjct 206417 CTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 206358 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || | |||||| | ||||||| Sbjct 206357 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 206299 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || ||||| ||| |||| || || | || || |||| Sbjct 206298 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 206239 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||| ||||| || |||||| ||| || || ||| | ||||| ||||| | Sbjct 206238 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAA 206179 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 |||||||||||||||| |||| || ||| | || ||||| ||||||| || | ||| Sbjct 206178 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAG 206119 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | || ||||| |||||||||||||| || || Sbjct 206118 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 206059 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || || || | | Sbjct 206058 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCG 205999 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 |||| ||| | | || || | |||||||| ||| || |||| ||||||||| || | Sbjct 205998 CAGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 205939 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 | ||||||||||| || | ||| |||||||||| || || ||||||||||||||||||| Sbjct 205938 TTTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 205879 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 205878 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 205819 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 | | || ||||| | | | || | ||||| || |||| || || || | Sbjct 205818 GTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 205760 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| | ||||||||||| ||||| || || || ||||| || || ||||| || || Sbjct 205759 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 205700 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || |||||||||||||| ||| ||||||||||| ||||| || ||||| ||||| Sbjct 205699 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTA 205640 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| || || |||||||| || || | || | || ||||| ||| Sbjct 205639 GCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 205580 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| || |||||||| |||||||| || | ||||| | || || ||||| | || Sbjct 205579 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAAT 205520 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 || ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 205519 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 205460 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCT 158662 || || |||||||| || ||||| |||||| Sbjct 205459 GCTCATAACTTCCCTCTAGATCTAGCTGCT 205430 >seq1880 Length=405587 Score = 464 bits (514), Expect = 7e-126 Identities = 472/615 (77%), Gaps = 0/615 (0%) Strand=Plus/Minus Query 159777 TGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATG 159836 |||||| |||||||||||||| |||||||| || |||||||| || |||||| || Sbjct 130705 TGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTG 130646 Query 159837 GTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGG 159896 |||||||||||||||||| | |||||||| || ||| ||||| | | || |||| || Sbjct 130645 GTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATATTTCGATTCATACTCTTTTTTCAAGG 130586 Query 159897 TTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGG 159956 || || || ||||| || ||||| || ||||||||||||||||| ||| || | || | Sbjct 130585 ATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGC 130526 Query 159957 AGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGA 160016 || |||| || || || ||||||||||| ||||| || || || ||||||||||| || Sbjct 130525 TGCTTTGTTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 130466 Query 160017 ACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGT 160076 ||||| ||||| || ||| | || ||||||| ||||| |||||||| ||||| Sbjct 130465 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 130406 Query 160077 CACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCT 160136 ||| || |||||||| ||||| || ||||| || ||||| ||||| || || || ||| | Sbjct 130405 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 130346 Query 160137 TCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTAT 160196 ||||| || ||||| ||||| || || | ||| |||||| || |||| | | Sbjct 130345 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 130286 Query 160197 TGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGA 160256 ||| | ||| | ||||| ||||| || || ||||| |||||| ||| | ||||| || Sbjct 130285 CGGTTTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGA 130226 Query 160257 AGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGC 160316 |||||||||||||||||| ||||||||||| || || ||||| || ||||| ||||||| Sbjct 130225 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGC 130166 Query 160317 TTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 ||||||||| || ||||| || ||||||||| |||| ||||||||||| || ||||| Sbjct 130165 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 130106 Query 160377 TAGAGGTAACGCACT 160391 | || ||||| || Sbjct 130105 ACGTGGAAACGCTCT 130091 >seq32758 Length=53022 Score = 181 bits (200), Expect = 1e-40 Identities = 188/245 (77%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||| |||||||||||||| || |||| | | |||||| || ||||| ||| Sbjct 20943 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 20884 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| ||||| || || || || | ||||| ||| | | || || | |||||| Sbjct 20883 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 20824 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 || ||| || |||| ||||||||| || || ||||||||||| || | ||| |||| Sbjct 20823 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG-ATGTA 20765 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 ||||| || || |||||||||||||||||||| || || ||| | ||||| ||||| ||| Sbjct 20764 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20705 Query 158243 TTCGG 158247 ||||| Sbjct 20704 TTCGG 20700 >seq27014 Length=84001 Score = 174 bits (192), Expect = 2e-38 Identities = 204/272 (75%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||| |||||||||||||| || |||| | |||||||| || ||||| ||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| |||| | || || || | ||||| ||| | | ||||| | |||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 | ||| || |||| |||| |||| || || ||||||| || || | ||| ||||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 ||||| || || |||||||||||||||||||| || || ||| | ||||| ||||| ||| Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20151 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 |||| || || | | || |||||||||||| Sbjct 20152 -TCGGCGGCTC-CCTATCAGTGCTATGCATGG 20181 >seq5280 Length=204759 Score = 158 bits (174), Expect = 1e-33 Identities = 224/311 (72%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| ||||| ||| | || ||| | || |||| ||||| ||||| | Sbjct 154375 CTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 154316 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| | ||| || || | |||||| | ||||||| Sbjct 154315 GATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATTATTGCCTTCATTGCTGCTC 154257 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || ||| | ||||| ||| |||| || || | || || || | Sbjct 154256 CTCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAA 154198 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||| ||||| || |||||| || || || ||| | ||||| ||||| | Sbjct 154197 ATATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAA 154138 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 |||||||||||||||| |||| || ||| | || ||||| ||||||| || | ||| Sbjct 154137 TCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATAG 154078 Query 157974 TATTCCACTTC 157984 | | |||||| Sbjct 154077 TTCTACACTTC 154067 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 158216 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 158275 || || ||| | ||||| ||||| || ||||| || || || ||| | |||||||||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 158276 AGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGGT 158335 | || ||||| | || | ||||| || ||| || || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 158336 TATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGT 158395 || | ||| ||||||| ||||| || || || ||||| || || ||||| || || || Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 158396 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCT 158455 || ||| |||||||||| ||| |||||||||| |||| || | || ||| | | | Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGAT 175647 Query 158456 GCATGGCCTGTTGT 158469 | ||||||||||| Sbjct 175648 TCTTGGCCTGTTGT 175661 >seq32305 Length=14517 Score = 132 bits (146), Expect = 5e-26 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 157721 TGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGC 157779 ||||| ||||| ||||||| ||||| || | | |||||| ||||| || || | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTTC 12674 Query 157780 CTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACT 157839 |||| | | |||| | || || || ||||| || || || ||||| ||| |||| || || Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 157840 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCT 157899 | || || ||||| || ||||| ||||| || |||||| ||| || || ||| | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 157900 CCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCC 157959 ||||| || || |||||||||||| |||| |||| || ||| | || |||| ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 157960 TT 157961 || Sbjct 12493 TT 12492 >seq28127 Length=41111 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||| |||||||||||||| || |||| | | |||||| || ||||| ||| Sbjct 29546 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 29605 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| ||||| || || || || | ||||| ||| | | || || | |||||| Sbjct 29606 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 29665 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTA 158162 || ||| || |||| ||||||||| || || ||||||| Sbjct 29666 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 >seq28567 Length=163623 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 158462 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAAC 158521 ||||| || || || ||||| || || | || | || ||||| |||||||| || Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 158522 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 158581 |||||||| |||||||| || | ||||| | || || |||| | || | |||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 158582 GATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 158641 ||| | | ||| | ||| | ||| ||||||||||||||||| || || || || ||| Sbjct 84047 GATAT--TTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 158642 TTCCCACTGGATCTTGCTGCT 158662 ||||| || ||||| | |||| Sbjct 83989 TTCCCTCTAGATCTAGATGCT 83969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570146330774400