Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq24293 560 1e-154 seq1880 347 1e-90 seq27014 168 8e-37 seq32758 154 2e-32 seq5280 136 5e-27 seq32305 127 3e-24 seq28567 91.5 2e-13 >seq24293 Length=256785 Score = 560 bits (620), Expect = 1e-154 Identities = 718/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || | |||||| | |||||||| Sbjct 206356 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 206298 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 206297 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206238 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||| ||||| || |||| |||| || |||||| | ||||| || || || Sbjct 206237 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAAT 206178 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 ||||||||| ||||| ||||||| ||| | || ||||| ||||||| || | |||| Sbjct 206177 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGT 206118 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | |||||||| ||||| |||||||| || ||| Sbjct 206117 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 206058 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||| || ||||| ||||||||| || ||||| || || || || | || Sbjct 206057 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGC 205998 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 || ||| | | || || | |||||||| ||| ||||| | ||||| || || || Sbjct 205997 AGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 |||||||| ||||| | ||| |||| ||||| || ||||||||||| || ||||| || Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 || |||||||| ||||| || |||||||| || || || || |||||||| ||||| || Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| | || | || || || |||| ||| || || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||||| ||||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 || |||||||||||||||||| ||||||||||| |||||| | ||||| ||||| || Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||||||||| || |||||||| || || | || | ||||| ||||| || || Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 ||| ||||| ||||| |||||||| || | | || | ||||| ||||| | || || Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATAC 205518 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 205517 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 205458 Query 181940 GCACAACTTCCCGCTTGATCTTGCAGC 181966 || |||||||| || ||||| || || Sbjct 205457 TCATAACTTCCCTCTAGATCTAGCTGC 205431 >seq1880 Length=405587 Score = 347 bits (384), Expect = 1e-90 Identities = 446/615 (73%), Gaps = 0/615 (0%) Strand=Plus/Minus Query 182759 TGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTG 182818 |||||| |||||||| || || ||| ||||| || ||||| | || ||||| ||| Sbjct 130705 TGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTG 130646 Query 182819 GTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGG 182878 ||| || || || ||| |||| || || || || | ||| | | || |||| || Sbjct 130645 GTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATATTTCGATTCATACTCTTTTTTCAAGG 130586 Query 182879 TTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGG 182938 || || || |||||||| ||||| || ||||||||||||||||| ||| || |||| | Sbjct 130585 ATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGC 130526 Query 182939 AGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGA 182998 || || | | ||||| ||||||| || ||||| ||||| || | ||||||||| || Sbjct 130525 TGCTTTGTTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 130466 Query 182999 ACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGT 183058 ||||| ||||| || || | | ||||| | || || || ||||| ||||| Sbjct 130465 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 130406 Query 183059 TACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTT 183118 || || || || |||||||| |||||||| |||||||| ||| |||||| |||||||| Sbjct 130405 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 130346 Query 183119 GCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCAT 183178 || ||||||||||| ||||| || || | ||| | ||| | | || |||| | | Sbjct 130345 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 130286 Query 183179 TGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGA 183238 || | ||||| || || ||||| ||||| || || ||| || ||| | ||||| || Sbjct 130285 CGGTTTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGA 130226 Query 183239 AGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGC 183298 ||||||||| || ||||| |||||||| || || || || | || ||||| | ||||| Sbjct 130225 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGC 130166 Query 183299 TTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 |||| |||| || ||||| || ||||||||| | || |||||||| || |||||||| Sbjct 130165 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 130106 Query 183359 TAGAGGTAACGCACT 183373 | || ||||| || Sbjct 130105 ACGTGGAAACGCTCT 130091 >seq27014 Length=84001 Score = 168 bits (186), Expect = 8e-37 Identities = 255/359 (71%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 |||||||| ||||| |||||||| || ||| | |||||||| || ||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || |||| | || || || | || || ||| | | ||||| | |||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 | ||| ||||| | ||| | || || || ||||||| ||||| | ||| |||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||||| || ||||||||||| || ||||| || || |||||||| ||||| || |||||| Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20151 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 181607 | || || || || ||||||| ||||| ||||| ||||| | ||| | || | Sbjct 20152 -TCGGCGGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 181608 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666 || || | |||| ||| || || | ||||||| || || ||||| ||||| || Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAAC 20268 >seq32758 Length=53022 Score = 154 bits (170), Expect = 2e-32 Identities = 182/245 (74%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 |||||||| ||||| |||||||| || ||| | | |||||| || ||||| |||| Sbjct 20943 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 20884 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || ||||| || || || || | || || ||| | | || || | |||||| Sbjct 20883 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 20824 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 || ||| ||||| | ||||| || || || |||||||| ||||| | ||| | || Sbjct 20823 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT-GTA 20765 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 ||||| || ||||||||||| || ||||| || || |||||||| ||||| || |||||| Sbjct 20764 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20705 Query 181548 TTTGG 181552 || || Sbjct 20704 TTCGG 20700 >seq5280 Length=204759 Score = 136 bits (150), Expect = 5e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 181521 TTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGT 181580 || |||||||| ||||| || ||||| || || || || || |||||| | ||||| ||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 181581 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 181640 || || || || ||| | | | || || || ||| ||| || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 181641 TACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGT 181700 |||| ||| | ||||| ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 181701 CGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCA 181760 || ||| |||||||||||||| |||||||||| |||| | | | || ||| | | Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGAT 175647 Query 181761 GCATGGCCTGTAGTT 181775 | |||||||| ||| Sbjct 175648 TCTTGGCCTGTTGTT 175662 Score = 134 bits (148), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 154374 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 154315 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| | ||| || || | |||||| | |||||||| Sbjct 154314 ATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATTATTGCCTTCATTGCTGCTCC 154256 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || ||| ||||||| || |||| || || | || || || || Sbjct 154255 TCCAGTAGATATTGATGGTATC-GTGAACCTGTTTCTGGATCTCTACTTTACGGAAAAAA 154197 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||| ||||| || |||| ||| || |||||| | ||||| || || || Sbjct 154196 TATTATCTCAGGTGCCATTATTCCTACTTATGCAGCTATTGGTTTGCACTTTTACCCAAT 154137 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 ||||||||| ||||| ||||||| ||| | || ||||| ||||||| || | |||| Sbjct 154136 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAATAATAGT 154077 Query 181280 CTTTCACTTC 181289 | |||||| Sbjct 154076 TCTACACTTC 154067 >seq32305 Length=14517 Score = 127 bits (140), Expect = 3e-24 Identities = 175/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 181026 TGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGC 181084 ||||| || || ||||||| || || | ||| | |||||| ||||| || || | | Sbjct 12732 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTTC 12674 Query 181085 CTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACT 181144 |||| | | |||| | || || || || || || || |||||||| || |||| || || Sbjct 12673 CTTCATTGTTGCTTCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCT 12614 Query 181145 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCT 181204 | || || ||||| || ||||| ||||| || |||| |||| || |||||| | Sbjct 12613 ACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTT 12554 Query 181205 TCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCC 181264 ||||| ||||| ||||||||||| |||| ||||||| ||| | || |||| ||||| Sbjct 12553 GCACTTTTATCCAATCTGGGAAGCAACATCCGTTGATGAATGGTTATACAACGACGGTCC 12494 Query 181265 TT 181266 || Sbjct 12493 TT 12492 >seq28567 Length=163623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 181767 CCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAAT 181826 |||||||| || || ||||| || || | || | ||||| ||||| || ||||| ||| Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 181827 GGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCA 181886 || ||||| |||||||| || | | || | ||||| |||| | || | |||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 181887 GACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAAC 181946 || | | ||| |||| | ||||||||||| ||||| || || || || || ||| Sbjct 84047 GATAT--TTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 181947 TTCCCGCTTGATCT 181960 ||||| || ||||| Sbjct 83989 TTCCCTCTAGATCT 83976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611531051874560