Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq29890 143 4e-29 seq21561 118 1e-21 >seq29890 Length=111316 Score = 143 bits (158), Expect = 4e-29 Identities = 407/619 (66%), Gaps = 10/619 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || ||||||||||| || || || || || ||||| ||||| ||||| || || || Sbjct 72424 AAACAGGCGAAGTCGCAGTGCAGCCCTTCGTCTCTGGAGATTAACTCGTTCGAGAAAGTC 72483 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 ||||| |||||||| || |||||||||||||| ||||||| |||| ||| ||| ||||| Sbjct 72484 AGTCCCGGCATTAGCCCTCGCTTTTTGAGCCAGAATATGG-AGCAGAAGCTTCCGGAAAA 72542 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || ||||| || || || || || | || ||| | | ||| | | Sbjct 72543 GAATATACCTTCGACACAAGCGAAGGCCACTATTCGCTCCGCAAACGACTCCGACC--CC 72600 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | ||||| | || ||| ||| | || || || ||||| || || Sbjct 72601 TCGATCCAGCGGAGGGCCCACTTGGCCTTCGTCTCGATGCAGGGGATGGTTTCGATCGCG 72660 Query 39851 TTAAAGAGATAATGTTTTTCATCAC--TATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | ||| ||| | | |||||| | || || || | || || || | Sbjct 72661 TGGAAGAG--CAGGTTCTTCTCCGCGGAATCTTTGATGTAAGTTTCGAGCAAGAGGCTGT 72718 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || |||||||| ||||| || | || || | Sbjct 72719 ACATCTCGGAGTGGATGTTCTCTATGGCGATCTGAAAGCCGTAGAAGGCCCGAGCCTCCG 72778 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| |||| |||| | || || || || || || | Sbjct 72779 AGACCTGGACCTCCTTCATGAATCGGCCCGCAAGGTTCTCCAATACGATGCCGTCGGATG 72838 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 |||| || || || | || ||||| || |||| || || || | || | | || Sbjct 72839 CGGCGAAGAAGGCGAGCACGTGTTTGATGAAATGCTTCTCGTCAGCAGTAAGAGCGTCCC 72898 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || ||| | || | ||| || || ||||| ||||| || || || || || | Sbjct 72899 AGTGTCGGAGATCCTGGGACAAATCGACCTCCTCAGCCGTCCAGAAGGAGGCTTCGGCTT 72958 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGAT 40208 | |||||||| | ||| || | | | || ||||| || || ||| |||| || ||| | Sbjct 72959 TCTTGTACATCTCCCAGATTTGAGGGTACTGTATCGGGAACATACAGAATCGATCTGGGT 73018 Query 40209 TTTTTGCAAGGATGGGTTC 40227 || || |||| |||||| Sbjct 73019 TTGGGGCGAGGAGGGGTTC 73037 >seq21561 Length=15626 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||||| ||| |||||| |||||||| | ||| ||| Sbjct 4457 CCACCCTGGTCCACATATCGAGCAGTGTCATTGAAGACTCGAAGCATCGGGACAATCCCA 4398 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||| ||| ||||||||||| | || || || ||| | ||| Sbjct 4397 TTTGATGTACCATTTGTCCCACGTATATAACTTCCAGTAGCACGGATGTTATGCACAGAA 4338 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | ||||| |||| || |||||||| Sbjct 4337 ACACCAATTCCTCCAGCAGATTTGCTTATAATTGCACACTCCTTCAGAGTATCATATATG 4278 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 ||||| |||||||||||| |||| Sbjct 4277 CCCTCAATGCTATCATCTTTCAT 4255 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| | |||||| | || |||| || |||||||| |||||| |||| |||| || Sbjct 4958 CTCTCTCTCATATCGAGTGTATAAGGTCTCAAATTCATCACCCCAACAATCAGCCAACCC 4899 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||| | || |||||||| | ||| |||||| ||| | | |||| || |||||| Sbjct 4898 AGGAGACTCGTTTGGACAAAACAACGACCACTGTCCATTAGATTGGACTCTTTGCATAAA 4839 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 |||||| || | ||||||||| ||| |||||||||| Sbjct 4838 TAGATCAGGCACCCAAAGAGCATAAAACAGATCTCTGG 4801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683459212697280