Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq938 138 1e-27 seq11877 120 4e-22 seq29893 91.5 2e-13 seq33802 86.0 8e-12 seq7589 84.2 3e-11 >seq938 Length=1173706 Score = 138 bits (152), Expect = 1e-27 Identities = 372/564 (66%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| |||| || || || || || || || || ||||||||||| || Sbjct 1020756 GTGCAGACCCTCGTCTCTCGAGATTAGCTCGTTGGAAAAAGTTAATCCTGGCATGAGGCC 1020815 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || |||||||||||| | || |||||||| |||||||||||| || ||||| || || Sbjct 1020816 GCGTTTCTTCAACCAAAATATGGCGCAGAAGCTCCCGGAGAAGAATATCCCCTCAACGCA 1020875 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||||| || | || || ||||| || || || | | || | ||| | || Sbjct 1020876 AGCAAAGGCGAGTAGCCGCTCGGCAAAAGATTCGGA---TCCGTCGATCCAACGTAGGGC 1020932 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| || ||||||||||| | ||||| || || | || ||| || | | |||| Sbjct 1020933 CCACTTGGCCTTCTTCTCCACGCATGGGACTGTGTCAATAGCTCGGAAGAGGCGACTCTT 1020992 Query 122910 TTCAGATCCATCCTTAATGTATTTGTCAATC--AATTTTGAATATGTTTCGCCATGAACC 122967 || | ||| || |||||| | || | | || || || | ||| || | Sbjct 1020993 CTCGGCCGAATCTTTGATGTATGTTTCGAGCAGAAGACTG--TACATCTCGGAGTGGATG 1021050 Query 122968 ATTTCATTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATC 123026 | || | || || || || |||| || | |||||| ||| | ||| || || | Sbjct 1021051 TTCTCGAT-TGCAATCTGGAATCCGTAAAACGCGCGCGCCTCGGAAACCTGGACTTCTTT 1021109 Query 123027 CGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAG 123086 | || || | | |||||| ||||| || |||||||| |||||||||| ||||| Sbjct 1021110 CATGAACCTGCCAGCTAGATTCTCCAAAACGATGCCATCGGAGGCAGCAAAGAAGGCCAG 1021169 Query 123087 GATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTT 123146 | | || ||||| | ||| |||| || | |||| | ||||| | | || || | Sbjct 1021170 AACATGTTTGATGAAATGCTTCTCATCGGCAGTGAGGGCTTCCCAGTGGGCGAGGTCCTG 1021229 Query 123147 GGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTATAGAGTTCCCA 123206 |||||||| || || || || |||||| | || ||||| || || | |||||| Sbjct 1021230 CGACAAATCTACCTCCTCGGCTGTCCAAAAGGAAGCTTCGGCCTTCTTGTACATTTCCCA 1021289 Query 123207 GAGTTGTGGATACTTCAGGGGGAA 123230 | || || |||| | |||||| Sbjct 1021290 AATCTGAGGGTACTCAATGGGGAA 1021313 >seq11877 Length=307084 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | |||||||| || ||||| || | || ||||| | ||||| Sbjct 285768 TCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATTATACCAGTATTCCCTTCAAAA 285709 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || || || | ||| || || || ||||||||| || | Sbjct 285708 CCATCCATTTCTGTTAATAGCTGGTTCAGTGTCTGCTCCCTTTCATCATTTCCTCCACCA 285649 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||||| | | ||| || || |||||||| ||||||| || || || ||||| Sbjct 285648 ATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATACTATGCATGGG 285589 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| ||| | | || || ||||| || | | ||| || |||||||||||| Sbjct 285588 GCATTTTCCTTGGCCTTCTTGAAAAGGTCGCGGACTCGTGAGGCTCCAACACCAACAAAC 285529 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 ||||| ||||| | | | || | || || ||||| ||| | |||||| || | Sbjct 285528 ATCTCAACAAATTCGGAACCTGA--AATGGAGAAAAATGGCACACCCGCTTCACCAGCAA 285471 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||| ||| || | ||||||||| ||||| || Sbjct 285470 TGGCCTTGGCCAGCAAGGTCTTTCCAGTACCAGG 285437 >seq29893 Length=995234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || ||||| || || | || |||||||| || || || ||||||||||| | || Sbjct 40548 AATCCGTCCATTTCAGTCAATAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--GC 40605 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| || || | | ||| | || || |||||||||||||||||||| ||||| Sbjct 40606 C-ACCAAGCCCTGCCCCTCTCTGCCTTCCAACGGCATCAATCTCATCAATGAAAACAATG 40664 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| ||| || | || || | ||| | || ||| || || ||||| Sbjct 40665 CAAGGTGCCTTTGACTTTGCTTTCTCGAATAAATCCCTGACTCTTGAAGCTCCAACACCT 40724 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||| ||||||||| | || |||| || || ||| || || | ||||| Sbjct 40725 ACAAACAGCTCCACAAATTCTGAAGCAGCACATGAGAAGAACGGAACGCCGGCCTCACCA 40784 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 | | |||| ||| | ||||| ||||| ||||| || ||| | | |||| |||| Sbjct 40785 GACACTGCTCTGGCCAAAAGGGTTTTTCCTGTACCCGGTGGACCGACCAAAAGGCAGCCT 40844 Query 11837 CGGGGGATCTTGGCACC 11853 || || || ||||| Sbjct 40845 TTAGGTATTTTTGCACC 40861 >seq33802 Length=298597 Score = 86.0 bits (94), Expect = 8e-12 Identities = 294/453 (65%), Gaps = 18/453 (4%) Strand=Plus/Plus Query 11405 ATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCC 11464 |||| || ||| ||| ||| || || ||||| | || ||| || ||||| || Sbjct 23270 ATCTGCTCGCGGCCTTTCACGTCGGGCAGGCCCACCACCACCTGGCGGTCGAAACGGCCG 23329 Query 11465 GGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG 11524 || || || || ||| ||| || | || ||| || ||||| ||||| || | ||| Sbjct 23330 GGCCGGAGCAGTGCGGGATCGAGCACGTCGGGGCGGTTGGTGGCGGCAATCACGATGATG 23389 Query 11525 CCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCT 11581 || || || || ||||| |||||||| || || || || | || || || Sbjct 23390 CCT---TCGCTGCCCTCGAAGCCGTCCATCTCCACCAGCAACTGGTTCAGCGTCTGCTCG 23446 Query 11582 CTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCT 11639 | ||| || | || || ||| || || | ||| || ||||||||| || |||| Sbjct 23447 CGCTCGTCGT--GCCCGCCGCCCAAGCCGGCGCCGCGGTGGCGGCCCACCGCGTCGATCT 23504 Query 11640 CATCAATGAAGACAATACATGGT---TGATT-TTCGCGGGCGATTTCAAAGAGATCGCGA 11695 | || ||||||| || || || || || || || || || || | ||||| Sbjct 23505 CGTCGATGAAGATGATGCACGGCGCATGCTTCTTGGCCTGC----TCGAACATGTCGCGC 23560 Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATG 11755 || | |||| ||||| || || ||||||||||| |||| | | ||| | || | Sbjct 23561 ACGCGGCTGGCGCCCACGCCCACGAACATCTCCACGAAGTCCGAACCGGAGATCGAGAAG 23620 Query 11756 AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || || || || | || || |||||||| ||| || |||||||| || || || ||| Sbjct 23621 AACGGCACCTTGGCCTCGCCGGCGATGGCCTTGGCCAGCAGGGTCTTGCCGGTGCCGGGC 23680 Query 11816 TTACCCGCGAGAAGGGCGCCTCGGGGGATCTTG 11848 ||| | | || |||| || || |||||| Sbjct 23681 GGCCCCACCATCAGCACGCCGCGCGGAATCTTG 23713 >seq7589 Length=310294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||||||||||| |||||||| || |||||||| | |||| Sbjct 171404 GCAAAGTCGCAGTGGAGACCCTCATCTCTAGAAATAAGCTCGTTTGAGAATGTCAAACCT 171345 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 ||||| | |||| |||||| | |||| |||| || ||||| Sbjct 171344 GGCATCAATCCCCTCTTCTTAAGCCAAAAAATCGCACAGAA 171304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624878086099200