Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11877 123 3e-23 seq938 122 1e-22 seq29893 100 3e-16 >seq11877 Length=307084 Score = 123 bits (136), Expect = 3e-23 Identities = 233/335 (70%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 ||||| ||||| | ||||| || || || || |||| ||||| || ||| | ||||| Sbjct 285768 TCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATTATACCAGTATTCCCT-TCAAA 285710 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||| || || ||||| | || || |||| ||||||||| || Sbjct 285709 ACCATCCATTTCTGTTAATAGCTGGTTCAGTGTCTGCTCCCTTTCATCATTTCCTCCACC 285650 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||||| | | ||| || || |||||||| ||||||| || || |||||||| Sbjct 285649 AATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATACTATGCATGG 285590 Query 9736 TTGATTTT-CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 ||||| | | | ||| ||| || || || || || ||| || |||||||||| Sbjct 285589 GGCATTTTCCTTGGCCTTCTTGAAA-AGGTCGCGGACTCGTGAGGCTCCAACACCAACAA 285531 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| ||||| | | | ||| || | || || || ||| | |||||| ||| Sbjct 285530 ACATCTCAACAAATTCGGAACCTGAA-ATGGAGAAAAATGGCACACCCGCTTCACCAGCA 285472 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| ||| || | ||||| || ||||| || Sbjct 285471 ATGGCCTTGGCCAGCAAGGTCTTTCCAGTACCAGG 285437 >seq938 Length=1173706 Score = 122 bits (134), Expect = 1e-22 Identities = 365/563 (65%), Gaps = 3/563 (1%) Strand=Plus/Minus Query 94382 TGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT 94441 |||||||| | |||| || || | |||||| | || |||||||| || || Sbjct 1021315 TGTTCCCCATTGAGTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCTTCCTTTT 1021256 Query 94442 GGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAA 94501 |||| || || ||||||||| | || |||| | | | | ||| | | || | || Sbjct 1021255 GGACAGCCGAGGAGGTAGATTTGTCGCAGGACCTCGCCCACTGGGAAGCCCTCACTGCCG 1021196 Query 94502 ATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTT 94561 |||| ||| | ||||| ||| | | ||||| |||||||||| |||||||| || |||| Sbjct 1021195 ATGAGAAGCATTTCATCAAACATGTTCTGGCCTTCTTTGCTGCCTCCGATGGCATCGTTT 1021136 Query 94562 TTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCT 94621 | |||||| | | || || | || || || || || ||| | | || | Sbjct 1021135 TGGAGAATCTAGCTGGCAGGTTCATGAAAGAAGTCCAGGTTTCCGAGGCGCGCGCGTTTT 1021076 Query 94622 ATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACA 94681 | | | ||| | | || | | || |||| |||||| || | || | Sbjct 1021075 ACGGATTCCAGATTGCAATCGAGAACATCCACTCCGAGATGTACAGTCTTCTGCTCGAAA 1021016 Query 94682 AGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGT 94741 || || || ||| || ||||||| | ||||| ||| || | ||||| || | Sbjct 1021015 CATACATCAAAGATTCGGCCGAGAAGAGTCGCCTCTTCCGAGCTATTGACACAGTCCCAT 1020956 Query 94742 GTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTG 94801 | | | ||||| || | ||||| | ||| | || | || || |||| Sbjct 1020955 GCGTGGAGAAGAAGGCCAAGTGGGCCCTACGTTGGATCGACGGA---TCCGAATCTTTTG 1020899 Query 94802 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 94861 | ||||| || |||| ||||| || |||||||| || |||||||| || |||||||| Sbjct 1020898 CCGAGCGGCTACTCGCCTTTGCTTGCGTTGAGGGGATATTCTTCTCCGGGAGCTTCTGCG 1020839 Query 94862 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 94921 | || | |||| | ||||| || || ||||||||||| | || ||||||||||| | Sbjct 1020838 CCATATTTTGGTTGAAGAAACGCGGCCTCATGCCAGGATTAACTTTTTCCAACGAGCTAA 1020779 Query 94922 TCTCTCGTGACGAGGGACTCCAC 94944 |||| | |||||||| || ||| Sbjct 1020778 TCTCGAGAGACGAGGGTCTGCAC 1020756 >seq29893 Length=995234 Score = 100 bits (110), Expect = 3e-16 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || || ||||| || ||||| || || |||||||| || |||| ||||||||| | || Sbjct 40548 AATCCGTCCATTTCAGTCAATAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--GC 40605 Query 9674 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 |||| || || | | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 40606 C-ACCAAGCCCTGCCCCTCTCTGCCTTCCAACGGCATCAATCTCATCAATGAAAACAATG 40664 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 || ||| ||| || || || | ||||| || |||| || || |||| Sbjct 40665 CAAGGTGCCTTTGACTTTGCTTTCTCGAATAAATCCC--TGACTCTTGAAGCTCCAACAC 40722 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||||||| | || || | |||| || ||| || || | |||| Sbjct 40723 CTACAAACAGCTCCACAAATTCTGAAGCAGCACATGAGAAGAACGGAACGCCGGCCTCAC 40782 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | | | |||| ||| | ||| || || || ||||| || Sbjct 40783 CAGACACTGCTCTGGCCAAAAGGGTTTTTCCTGTACCCGG 40822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580331722588480